LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g03654	ATGAGTGGTCCGTCGCGAGAAGAGGAATCAAAGGTAGACGAGAGAGAACACAAAGAAGGAGAAGGTAACCGGTTACTGGAAGTAGACGGTGAAAATGAGACGGAGGAGGACGACGAAGCGGCATATGAATCCGGCGAGAAAATCGTGGTGGTGGATTTCGAATTCGATTCCGTGGATGATTCCGCCGTTCCTCCTTTTTCATGGAAGAAGCTATGGATGTTCACTGGACCTGGATTCTTGATGAGTATAGCCTTTTTGGATCCGGGGAATCTGGAAGGGGATCTGCAGGCCGGAGCGATTGCCGGATATTCGCTGTTGTGGTTGTTGATGTGGGCGACTTTCATGGGGTTGTTGATTCAGCTTCTCTCTGCGAGAGTTGGTGTTGCTACTGGTCGTCATCTTGCTGAGCTTTGTAGGGATGAGTATCCTAATTGGGCTCGCTATGTGCTTTGGTTTATGGCGGAATTGGCTTTGATTGGGGCTGATATTCAAGAGGTTATTGGGAGTGCTATTGCTATTCAGATTCTTAGCCGGGGTGTTTTGCCGCTTTGGGCTGGTGTTCTTATCACTGCTTCTGATTGCTTTTTCTTTCTATTTCTTGAGAACTACGGAGTAAGGAAGTTGGAAGCTGCTTTTGCAGTTCTCATTGCTACCATGGCTATTTCCTTTGCCTGGATGTTTGGTGACACAAAACCTAGTGGAAAAGAGCTTTTGATGGGTATTTTGATTCCAAGACTTAGCTCAAAAACAATCCGTCAGGCTGTGGGCGTTGTGGGATGTGTCATTATGCCTCACAATGTATTTCTGCATTCTGCTTTAGTTCAATCAAGGAAGATTGATCCACTTAAGAAAGGCCGGGTGCAAGAGGCTCTTAACTACTATAATATTGAGTCAACGGTTGCACTTTCAGTCACCTTCATGATAAATCTGTTTGTAACGACAGTGTTTGCCAAGGGTTTCTATGATACAAAGCAGGCAAAGAGCATAGGATTGGTGAATGCAGGGCAGTATCTTGAGGAAAAATATGGAGGAGGTCTCTTCCCTATTCTCTATATATGGGGAATCGGGTTATTGGCGGCCGGGCAAAGTAGCACCATCACCGGCACGTATGCCGGGCAATTCATAATGGGGGGTTTCCTCAACCTTCGATTAAAGAAATGGTTGAGAGCATTGATCACCCGGAGTTGTGCAATCGTGCCAACTATAATTGTAGCTATTGTTTATAACAGCTCAGAAGCCTCACTGGATGTTTTGAATGAATGGCTTAATGTGCTTCAGTCCGTACAAATTCCCTTTGCATTGATTCCCCTCCTCACGTTGGTCTCCAAAGAGCGTATCATGGGGTCCTTTAAGATTGGGCCTGTTCTTCAGAGGGTGGCATGGACGGTTGCTGCACTGATAATAGTTATTAACGGGTATCTCTTGGTAGATTTCTTCGTTTCGGAGGTGAACGGCGTATTGTTTGGTTTTGTAGCCTGCTCTTGCACAGTTTTATACATTGCATTCCTTGTATATTTAATTTCACAAAGTGGCGCTCTTCCTTCCGCACTGGTGGATCGACTTCCAAAGGGATTTTCTGTTACAGAGAACTAA	1593	0.4539	MSGPSREEESKVDEREHKEGEGNRLLEVDGENETEEDDEAAYESGEKIVVVDFEFDSVDDSAVPPFSWKKLWMFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATFMGLLIQLLSARVGVATGRHLAELCRDEYPNWARYVLWFMAELALIGADIQEVIGSAIAIQILSRGVLPLWAGVLITASDCFFFLFLENYGVRKLEAAFAVLIATMAISFAWMFGDTKPSGKELLMGILIPRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRKIDPLKKGRVQEALNYYNIESTVALSVTFMINLFVTTVFAKGFYDTKQAKSIGLVNAGQYLEEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVAIVYNSSEASLDVLNEWLNVLQSVQIPFALIPLLTLVSKERIMGSFKIGPVLQRVAWTVAALIIVINGYLLVDFFVSEVNGVLFGFVACSCTVLYIAFLVYLISQSGALPSALVDRLPKGFSVTEN	530

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vifa2g03654	530	PRINTS	Natural resistance-associated macrophage protein signature	180	199	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
Vifa2g03654	530	PRINTS	Natural resistance-associated macrophage protein signature	423	442	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
Vifa2g03654	530	PRINTS	Natural resistance-associated macrophage protein signature	361	380	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
Vifa2g03654	530	PRINTS	Natural resistance-associated macrophage protein signature	389	406	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
Vifa2g03654	530	PRINTS	Natural resistance-associated macrophage protein signature	150	176	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
Vifa2g03654	530	PRINTS	Natural resistance-associated macrophage protein signature	205	226	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
Vifa2g03654	530	PRINTS	Natural resistance-associated macrophage protein signature	254	277	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
Vifa2g03654	530	NCBIfam	Nramp family divalent metal transporter	76	445	-	-
Vifa2g03654	530	Hamap	Divalent metal cation transporter MntH [mntH].	57	479	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
Vifa2g03654	530	NCBIfam	metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	69	447	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g03654	Vifa-Chr2	1068065624	1068069110	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g03654	13	530	Inorganic Solute Cotransporters	AT1G47240	79.206	0.0	830

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g03654	K21398		-	gmx:100795013	886.33

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa2g03654	2	1068065624	1068069110	Vifa2g03654	2	1068065624	1068069110	ECH

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