Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03654 ATGAGTGGTCCGTCGCGAGAAGAGGAATCAAAGGTAGACGAGAGAGAACACAAAGAAGGAGAAGGTAACCGGTTACTGGAAGTAGACGGTGAAAATGAGACGGAGGAGGACGACGAAGCGGCATATGAATCCGGCGAGAAAATCGTGGTGGTGGATTTCGAATTCGATTCCGTGGATGATTCCGCCGTTCCTCCTTTTTCATGGAAGAAGCTATGGATGTTCACTGGACCTGGATTCTTGATGAGTATAGCCTTTTTGGATCCGGGGAATCTGGAAGGGGATCTGCAGGCCGGAGCGATTGCCGGATATTCGCTGTTGTGGTTGTTGATGTGGGCGACTTTCATGGGGTTGTTGATTCAGCTTCTCTCTGCGAGAGTTGGTGTTGCTACTGGTCGTCATCTTGCTGAGCTTTGTAGGGATGAGTATCCTAATTGGGCTCGCTATGTGCTTTGGTTTATGGCGGAATTGGCTTTGATTGGGGCTGATATTCAAGAGGTTATTGGGAGTGCTATTGCTATTCAGATTCTTAGCCGGGGTGTTTTGCCGCTTTGGGCTGGTGTTCTTATCACTGCTTCTGATTGCTTTTTCTTTCTATTTCTTGAGAACTACGGAGTAAGGAAGTTGGAAGCTGCTTTTGCAGTTCTCATTGCTACCATGGCTATTTCCTTTGCCTGGATGTTTGGTGACACAAAACCTAGTGGAAAAGAGCTTTTGATGGGTATTTTGATTCCAAGACTTAGCTCAAAAACAATCCGTCAGGCTGTGGGCGTTGTGGGATGTGTCATTATGCCTCACAATGTATTTCTGCATTCTGCTTTAGTTCAATCAAGGAAGATTGATCCACTTAAGAAAGGCCGGGTGCAAGAGGCTCTTAACTACTATAATATTGAGTCAACGGTTGCACTTTCAGTCACCTTCATGATAAATCTGTTTGTAACGACAGTGTTTGCCAAGGGTTTCTATGATACAAAGCAGGCAAAGAGCATAGGATTGGTGAATGCAGGGCAGTATCTTGAGGAAAAATATGGAGGAGGTCTCTTCCCTATTCTCTATATATGGGGAATCGGGTTATTGGCGGCCGGGCAAAGTAGCACCATCACCGGCACGTATGCCGGGCAATTCATAATGGGGGGTTTCCTCAACCTTCGATTAAAGAAATGGTTGAGAGCATTGATCACCCGGAGTTGTGCAATCGTGCCAACTATAATTGTAGCTATTGTTTATAACAGCTCAGAAGCCTCACTGGATGTTTTGAATGAATGGCTTAATGTGCTTCAGTCCGTACAAATTCCCTTTGCATTGATTCCCCTCCTCACGTTGGTCTCCAAAGAGCGTATCATGGGGTCCTTTAAGATTGGGCCTGTTCTTCAGAGGGTGGCATGGACGGTTGCTGCACTGATAATAGTTATTAACGGGTATCTCTTGGTAGATTTCTTCGTTTCGGAGGTGAACGGCGTATTGTTTGGTTTTGTAGCCTGCTCTTGCACAGTTTTATACATTGCATTCCTTGTATATTTAATTTCACAAAGTGGCGCTCTTCCTTCCGCACTGGTGGATCGACTTCCAAAGGGATTTTCTGTTACAGAGAACTAA 1593 0.4539 MSGPSREEESKVDEREHKEGEGNRLLEVDGENETEEDDEAAYESGEKIVVVDFEFDSVDDSAVPPFSWKKLWMFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATFMGLLIQLLSARVGVATGRHLAELCRDEYPNWARYVLWFMAELALIGADIQEVIGSAIAIQILSRGVLPLWAGVLITASDCFFFLFLENYGVRKLEAAFAVLIATMAISFAWMFGDTKPSGKELLMGILIPRLSSKTIRQAVGVVGCVIMPHNVFLHSALVQSRKIDPLKKGRVQEALNYYNIESTVALSVTFMINLFVTTVFAKGFYDTKQAKSIGLVNAGQYLEEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVAIVYNSSEASLDVLNEWLNVLQSVQIPFALIPLLTLVSKERIMGSFKIGPVLQRVAWTVAALIIVINGYLLVDFFVSEVNGVLFGFVACSCTVLYIAFLVYLISQSGALPSALVDRLPKGFSVTEN 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03654 530 PRINTS Natural resistance-associated macrophage protein signature 180 199 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa2g03654 530 PRINTS Natural resistance-associated macrophage protein signature 423 442 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa2g03654 530 PRINTS Natural resistance-associated macrophage protein signature 361 380 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa2g03654 530 PRINTS Natural resistance-associated macrophage protein signature 389 406 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa2g03654 530 PRINTS Natural resistance-associated macrophage protein signature 150 176 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa2g03654 530 PRINTS Natural resistance-associated macrophage protein signature 205 226 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa2g03654 530 PRINTS Natural resistance-associated macrophage protein signature 254 277 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa2g03654 530 NCBIfam Nramp family divalent metal transporter 76 445 - -
Vifa2g03654 530 Hamap Divalent metal cation transporter MntH [mntH]. 57 479 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa2g03654 530 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 69 447 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa2g03654 530 MobiDBLite consensus disorder prediction 1 29 - -
Vifa2g03654 530 Pfam Natural resistance-associated macrophage protein 92 453 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa2g03654 530 MobiDBLite consensus disorder prediction 1 41 - -
Vifa2g03654 530 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 52 508 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03654 Vifa-Chr2 1068065624 1068069110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03654 13 530 Inorganic Solute Cotransporters AT1G47240 79.206 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03654 K21398 - gmx:100795013 886.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03654 2 1068065624 1068069110 Vifa2g03654 2 1068065624 1068069110 ECH