Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa2g03653 | ATGGAGAGTGATGCCTCAAAGAAAAGAACAAACACCAATCAATCACCTTCTGTTCTTGTTCCCAAGAGGCAGAGGGTTGTTTTGGAAGAAATTCCAGATCTCAACATTCCTGATTATCACAACCCTAACCTCAGCAAATCAGATTCAACATCAACGCTTTCTTTACTTCCCAATTCCAATTTGGATAACCCAGTTTGTAACAAAAGCAGTGTTAAACGTGAGAATCAACAGATTATTGAACCTTATGTATCCGATATCTCTGATTATCTTCGCACGATCGAGGTAAAACGGAGACCAGCGGTTGACTACTTGGATAATGTTCAGAGATGCATTACTACAAACATGAGGGGGACATTGATTGATTGGTTAGTTGAGGTTGCTGATGAATACAAGCTTCTTCCAGAAACTCTTCATCTAGCTGTTTCTTACATTGACAGATTCTTATCTATTCAATCTATCAATAGATCCAAGCTTCAGTTGCTTGGTGTTTCTGCTATGCTCATTGCATCGAAGTACGAAGAAATCACTCCACCTAAAGTGGTAGATTTCTGCCAAATTACTGATAACACCTATGAACTGCATGAGGTTTTAGAGATGGAAGCTCACATACTCAAATCCCTAAATTTTGAAATGGGAAACCCCAATGTCACCACATTTTTGAAGAGGTTTGTTGCAATTGCATCTGAGAATCGAAAGACTTCCAGTTTGCAGTTTGAATATTTGTGCAACTATCTTGCTGATTTAAGCCTGCTTGAGTATGAGTGCATACAATTCTTGCCTTCCGTTGTGGCTGCCTCTGTTATATTTCTTGCCAAATTTATTATTCGGCCTAGAGTACATCCATGGACTTTGTCCCTCTATGAATCATTGGGTTATGGATCTGATGATTTAGAAGATTGTGTTACCATTCTACATGATTTGTATTTGTCAAGAAGGGCAGCATCCTTGAAAGCTGTTCGTGATAAATACAAGCAGAACAAGTTCAAACGTGTAGCAAACTTGCCTTCCATGCCAGAGTTGCGAGAACATTACTTTGAAGAAGTTCATAGCTGA | 1053 | 0.3903 | MESDASKKRTNTNQSPSVLVPKRQRVVLEEIPDLNIPDYHNPNLSKSDSTSTLSLLPNSNLDNPVCNKSSVKRENQQIIEPYVSDISDYLRTIEVKRRPAVDYLDNVQRCITTNMRGTLIDWLVEVADEYKLLPETLHLAVSYIDRFLSIQSINRSKLQLLGVSAMLIASKYEEITPPKVVDFCQITDNTYELHEVLEMEAHILKSLNFEMGNPNVTTFLKRFVAIASENRKTSSLQFEYLCNYLADLSLLEYECIQFLPSVVAASVIFLAKFIIRPRVHPWTLSLYESLGYGSDDLEDCVTILHDLYLSRRAASLKAVRDKYKQNKFKRVANLPSMPELREHYFEEVHS | 350 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa2g03653 | 350 | MobiDBLite | consensus disorder prediction | 40 | 58 | - | - | |
| Vifa2g03653 | 350 | SMART | Cyclin_C_2 | 214 | 337 | IPR004367 | - | |
| Vifa2g03653 | 350 | Pfam | Cyclin, N-terminal domain | 85 | 211 | IPR006671 | - | |
| Vifa2g03653 | 350 | Gene3D | - | 85 | 333 | - | - | |
| Vifa2g03653 | 350 | SMART | cyclin_7 | 218 | 306 | IPR013763 | - | |
| Vifa2g03653 | 350 | SMART | cyclin_7 | 121 | 205 | IPR013763 | - | |
| Vifa2g03653 | 350 | ProSitePatterns | Cyclins signature. | 116 | 147 | IPR006671 | - | |
| Vifa2g03653 | 350 | PANTHER | CYCLINS | 66 | 325 | IPR039361 | - | |
| Vifa2g03653 | 350 | Pfam | Cyclin, C-terminal domain | 214 | 336 | IPR004367 | - | |
| Vifa2g03653 | 350 | FunFam | G2/mitotic-specific cyclin | 99 | 210 | - | - | |
| Vifa2g03653 | 350 | SUPERFAMILY | Cyclin-like | 74 | 211 | IPR036915 | - | |
| Vifa2g03653 | 350 | SUPERFAMILY | Cyclin-like | 214 | 337 | IPR036915 | - | |
| Vifa2g03653 | 350 | Gene3D | - | 99 | 212 | - | - | |
| Vifa2g03653 | 350 | PIRSF | Cyclin_A_B_D_E | 2 | 348 | IPR046965 | GO:0016538|GO:0044772 | |
| Vifa2g03653 | 350 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Vifa2g03653 | 350 | FunFam | Cyclin superfamily protein, putative | 211 | 283 | - | - | |
| Vifa2g03653 | 350 | MobiDBLite | consensus disorder prediction | 38 | 58 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa2g03653 | Vifa-Chr2 | 1067136566 | 1067138186 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa2g03653 | 1 | 349 | Core Cell Cycle Gene Families | AT5G43080 | 50.992 | 4.51e-123 | 356 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa2g03653 | K06627 | - | gmx:100787417 | 382.104 |