Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03651 ATGGAGACCCGTGCCTCAAAGAAAAGAACAGCCACCATTCAACCACCGTTTGTCCTTGTTCCCAAAAGGCAGAGGGTTGTTTTGGAACAATTTCCAGATCTCAATTTTCCTGATTGTCAACCTATACAGAAACTCCAGCGTCGAAAAAACCCTAACCTCAACAAATCACCATTAACATCAACCATTTCTTTACTTCCTAATTCCAATTTTGATAAGCCCGTTTGTAACAAAAGCAATGCTAAACGTGAACACCAGCAGATTATTGAACCTTATGTATCCGATATCTCCGATTATCTTCGCACAATTGAGGTAAAACGGAGACCGGCGGTTGACTACATGGATAATGTTCAGAGATGCATTACTACAAACATGAGGGGGACATTGATTGATTGGTTAGTTGAGGTTGCTGATGAATACGAGCTTCTTCCAGAAACTCTTCATCTAGCTGTTTCTTACATTGACAGATTCCTATCTATCCAATCTGTCAATAGATCCAAGGTTCAGTTGATTGGTGTTTCCGCTATGCTCATTGCATCCAAGTATGAAGAAATCACTCCACCAAAAGCGGTAGATTTCTGCCAAATTACTGATAACACCTATGCACTGCAAGAGGTTTTAGAGATGGAAGCTCTCATACTCAAGTCCCTAAATTATGAAATGGGAAACCCTAATGTCACCACATTTTTAAAGAGGGTTGTTGCAATTGCATCTGAGAATCGAAAGACTTCCAATTTGCAGTTTGAATATTTGTGCAACTATCTTGCTGACTTAAGCTTGCTTGACTACGAGTGTATAAAATTCCTGCCCTCTGTTGTGGCAGCCTCTGTTATATTTCTTGCCAAATTTATTCTCCGGCCTAGAGTACATCCTTGGACTTTGTCCCTCTATGAATCACTGGGTTACCAATCTGATGATTTGGAAGAATGTGTCACTATTCTACATGATTTGTATTTGTCAAGAAGGGTAGCATCCTTGAAAGCTGTTCGTGACAAATATAAGCAGAATAAGTTTAAATGTGTAGCAAACTTGCCTTCCTTGCCAGAGCTGCCATCCCGTTACTTCGAAGAAGTTCATGGCTGA 1080 0.4028 METRASKKRTATIQPPFVLVPKRQRVVLEQFPDLNFPDCQPIQKLQRRKNPNLNKSPLTSTISLLPNSNFDKPVCNKSNAKREHQQIIEPYVSDISDYLRTIEVKRRPAVDYMDNVQRCITTNMRGTLIDWLVEVADEYELLPETLHLAVSYIDRFLSIQSVNRSKVQLIGVSAMLIASKYEEITPPKAVDFCQITDNTYALQEVLEMEALILKSLNYEMGNPNVTTFLKRVVAIASENRKTSNLQFEYLCNYLADLSLLDYECIKFLPSVVAASVIFLAKFILRPRVHPWTLSLYESLGYQSDDLEECVTILHDLYLSRRVASLKAVRDKYKQNKFKCVANLPSLPELPSRYFEEVHG 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03651 359 SMART Cyclin_C_2 223 346 IPR004367 -
Vifa2g03651 359 SUPERFAMILY Cyclin-like 223 347 IPR036915 -
Vifa2g03651 359 FunFam G2/mitotic-specific cyclin 108 219 - -
Vifa2g03651 359 SUPERFAMILY Cyclin-like 84 220 IPR036915 -
Vifa2g03651 359 Gene3D - 94 342 - -
Vifa2g03651 359 Pfam Cyclin, N-terminal domain 94 220 IPR006671 -
Vifa2g03651 359 ProSitePatterns Cyclins signature. 125 156 IPR006671 -
Vifa2g03651 359 PANTHER CYCLINS 79 340 IPR039361 -
Vifa2g03651 359 SMART cyclin_7 227 315 IPR013763 -
Vifa2g03651 359 SMART cyclin_7 130 214 IPR013763 -
Vifa2g03651 359 Gene3D - 108 221 - -
Vifa2g03651 359 FunFam Cyclin superfamily protein, putative 220 292 - -
Vifa2g03651 359 Pfam Cyclin, C-terminal domain 223 345 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03651 Vifa-Chr2 1066510223 1066511886 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03651 3 358 Core Cell Cycle Gene Families AT5G43080 50.278 7.39e-125 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03651 K06627 - gmx:100787417 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03651 2 1066510223 1066511886 Vifa2g03651 2 1066510223 1066511886 ECH