Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03650 ATGGAGACTCGTGCCTCAAAGAAGAGAGCTAACACCGATCAAAAGTCACAACTCGTTGTTCCAAAACGACAGAGGGTAGCTTTCTCCAAAATTCCAAACCTCAATTTTCGTGTTTATCAAACTAGACAAAAAACCAAACCTCAGATAAACCCTAACCTTAAAGAGTCAACAACAACAACAACCCTTCCTTTCCTTCATAATTCCAATTTGAATAAACCTGTTTATAACAAAACTAATGTGGAATGCGACCACCAACTGATCGTTAAACCTTATGTATCCGACATCGATCATCATCATCGTACAATGGAGAAAAAGCGAAGACCAATTGTTGGCTACATTGAGGATGCTCAGAAAGAGGTTACTATAAACATGAGGGGAACATTGGTGGATTGGTTAATGAAGGTTGCAGACGAGCACAAGCTTCTTCCTGAAACCCTTCATCTATGTATCTCCTACATTGACAGATTCTTATCTCTACAATCTGTTCCTGAAATATATCTTGCGTTGCTTGGTGTTTCGTCTATGTTCATTGCTTCAAAGTATGAAGAAATCACACCTCCAAAGGCGGTGGCTTTCTGCAAAATCACTGAGAACGCTTATCACCATTCAGAGGTTTTAAAGATGGAGGCTCACATACTCAAGTCACTAAATTATGAAGTAGGAAACCCTAATGTTACCACATTTCTAAAGAGGTTTATTGGACTTGCTAATGGGAATCAAAAGAATTCTAATTTACAGTTTGAATATCTGTGCAACTATCTTGCTGATCTAAGTTTGTTGGAGTATGAGTGTATAAGATTCTTGCCTTCTGTTGTGGCTGCGTCGGTTATATTTCTTGCTAGATTTATTATCCAACCAGAAGTACATCCTTGGACGCCATCGTTGTGTGAAAGCTTGGGTTACAAGTCATCTGAGTTAAAGGAATGTGTTGTTATTTTACATGACTTGTATTTCTCAAGAAGGGAAGCTTACTTGAAAACTCTTCGCAATAAATTCAATCTGAAAAAGTTCAAATGTGTGGCCAATTTGCCTTCTCCGCCAGAGGTGCCAACTCATTACTTCAAAGAAGCGTGA 1074 0.3864 METRASKKRANTDQKSQLVVPKRQRVAFSKIPNLNFRVYQTRQKTKPQINPNLKESTTTTTLPFLHNSNLNKPVYNKTNVECDHQLIVKPYVSDIDHHHRTMEKKRRPIVGYIEDAQKEVTINMRGTLVDWLMKVADEHKLLPETLHLCISYIDRFLSLQSVPEIYLALLGVSSMFIASKYEEITPPKAVAFCKITENAYHHSEVLKMEAHILKSLNYEVGNPNVTTFLKRFIGLANGNQKNSNLQFEYLCNYLADLSLLEYECIRFLPSVVAASVIFLARFIIQPEVHPWTPSLCESLGYKSSELKECVVILHDLYFSRREAYLKTLRNKFNLKKFKCVANLPSPPEVPTHYFKEA 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03650 357 SUPERFAMILY Cyclin-like 223 347 IPR036915 -
Vifa2g03650 357 SUPERFAMILY Cyclin-like 83 220 IPR036915 -
Vifa2g03650 357 ProSitePatterns Cyclins signature. 125 156 IPR006671 -
Vifa2g03650 357 Gene3D - 94 342 - -
Vifa2g03650 357 SMART Cyclin_C_2 223 346 IPR004367 -
Vifa2g03650 357 PANTHER CYCLINS 55 321 IPR039361 -
Vifa2g03650 357 SMART cyclin_7 130 214 IPR013763 -
Vifa2g03650 357 SMART cyclin_7 227 315 IPR013763 -
Vifa2g03650 357 FunFam Cyclin superfamily protein, putative 220 292 - -
Vifa2g03650 357 FunFam G2/mitotic-specific cyclin 109 219 - -
Vifa2g03650 357 Pfam Cyclin, C-terminal domain 223 345 IPR004367 -
Vifa2g03650 357 Pfam Cyclin, N-terminal domain 97 220 IPR006671 -
Vifa2g03650 357 PIRSF Cyclin_A_B_D_E 1 355 IPR046965 GO:0016538|GO:0044772
Vifa2g03650 357 Gene3D - 108 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03650 Vifa-Chr2 1066137806 1066139582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03650 1 356 Core Cell Cycle Gene Families AT5G43080 45.787 2.10e-106 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03650 K06627 - gmx:100787417 361.688