LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g03650	ATGGAGACTCGTGCCTCAAAGAAGAGAGCTAACACCGATCAAAAGTCACAACTCGTTGTTCCAAAACGACAGAGGGTAGCTTTCTCCAAAATTCCAAACCTCAATTTTCGTGTTTATCAAACTAGACAAAAAACCAAACCTCAGATAAACCCTAACCTTAAAGAGTCAACAACAACAACAACCCTTCCTTTCCTTCATAATTCCAATTTGAATAAACCTGTTTATAACAAAACTAATGTGGAATGCGACCACCAACTGATCGTTAAACCTTATGTATCCGACATCGATCATCATCATCGTACAATGGAGAAAAAGCGAAGACCAATTGTTGGCTACATTGAGGATGCTCAGAAAGAGGTTACTATAAACATGAGGGGAACATTGGTGGATTGGTTAATGAAGGTTGCAGACGAGCACAAGCTTCTTCCTGAAACCCTTCATCTATGTATCTCCTACATTGACAGATTCTTATCTCTACAATCTGTTCCTGAAATATATCTTGCGTTGCTTGGTGTTTCGTCTATGTTCATTGCTTCAAAGTATGAAGAAATCACACCTCCAAAGGCGGTGGCTTTCTGCAAAATCACTGAGAACGCTTATCACCATTCAGAGGTTTTAAAGATGGAGGCTCACATACTCAAGTCACTAAATTATGAAGTAGGAAACCCTAATGTTACCACATTTCTAAAGAGGTTTATTGGACTTGCTAATGGGAATCAAAAGAATTCTAATTTACAGTTTGAATATCTGTGCAACTATCTTGCTGATCTAAGTTTGTTGGAGTATGAGTGTATAAGATTCTTGCCTTCTGTTGTGGCTGCGTCGGTTATATTTCTTGCTAGATTTATTATCCAACCAGAAGTACATCCTTGGACGCCATCGTTGTGTGAAAGCTTGGGTTACAAGTCATCTGAGTTAAAGGAATGTGTTGTTATTTTACATGACTTGTATTTCTCAAGAAGGGAAGCTTACTTGAAAACTCTTCGCAATAAATTCAATCTGAAAAAGTTCAAATGTGTGGCCAATTTGCCTTCTCCGCCAGAGGTGCCAACTCATTACTTCAAAGAAGCGTGA	1074	0.3864	METRASKKRANTDQKSQLVVPKRQRVAFSKIPNLNFRVYQTRQKTKPQINPNLKESTTTTTLPFLHNSNLNKPVYNKTNVECDHQLIVKPYVSDIDHHHRTMEKKRRPIVGYIEDAQKEVTINMRGTLVDWLMKVADEHKLLPETLHLCISYIDRFLSLQSVPEIYLALLGVSSMFIASKYEEITPPKAVAFCKITENAYHHSEVLKMEAHILKSLNYEVGNPNVTTFLKRFIGLANGNQKNSNLQFEYLCNYLADLSLLEYECIRFLPSVVAASVIFLARFIIQPEVHPWTPSLCESLGYKSSELKECVVILHDLYFSRREAYLKTLRNKFNLKKFKCVANLPSPPEVPTHYFKEA	357

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g03650	357	SUPERFAMILY	Cyclin-like	223	347	IPR036915	-
	Vifa2g03650	357	SUPERFAMILY	Cyclin-like	83	220	IPR036915	-
	Vifa2g03650	357	ProSitePatterns	Cyclins signature.	125	156	IPR006671	-
	Vifa2g03650	357	Gene3D	-	94	342	-	-
	Vifa2g03650	357	SMART	Cyclin_C_2	223	346	IPR004367	-
	Vifa2g03650	357	PANTHER	CYCLINS	55	321	IPR039361	-
	Vifa2g03650	357	SMART	cyclin_7	130	214	IPR013763	-
	Vifa2g03650	357	SMART	cyclin_7	227	315	IPR013763	-
	Vifa2g03650	357	FunFam	Cyclin superfamily protein, putative	220	292	-	-
	Vifa2g03650	357	FunFam	G2/mitotic-specific cyclin	109	219	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g03650	Vifa-Chr2	1066137806	1066139582	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g03650	1	356	Core Cell Cycle Gene Families	AT5G43080	45.787	2.10e-106	314

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g03650	K06627		-	gmx:100787417	361.688

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