Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03646 ATGAATGATAAAAACAAACTAGCTTGTAACGTGAATCCGAAAACGACAACTCTTCAAAGATCATTCAACGAAGTTCGCGAAGGAAGGTATATTAAGTTCCTGCTTTGGTTTGTAGGGGGAATGGGAGGAGTAGAAATCTTGTGCATATTTTTGTTGTGGTTTTTCTTTGTAAGATCAAAAAATAATTTAGATGCAAGAGTGTATAATAATATTTCCATAATTGGTTTTAGAAAATTCAGTTATTCTGAATTGAAAAAAGCAACAAAAAATTTTAATCAAGAGATTGGAAGAGGTGTAGGAGGAGTTGTATACAAAGGTGTCCTGTTGGATGAACGAGTCATAGCAATGAAGAAATTAGCGGAAGCTAATCAAGGCGAAGAACAGTTTCTCGCGGAAGTAAGTAGCATTGGAAGCCTTAACCATATGAACTTGATTGAACTGTGGGGTTATTGCGCAGAAGGAAAACACAGAATGCTTGTGTATGAGTTCATGGAAAATGGTTCTTTAGCAGAACATTTAAGGTCTAATGGGTTGAATTGGAGTAAGAGATTTGACATAGCTTTAGGTACTGCAAAAGCTTGGAGAAGCAGTCACAACATATTTAAGGCCGTGCACTCACTTGGTGGCATTGGTGGCACAATTATCACTCACGAGCAAGTTGGGAAGACTTTCTGGTAG 678 0.3746 MNDKNKLACNVNPKTTTLQRSFNEVREGRYIKFLLWFVGGMGGVEILCIFLLWFFFVRSKNNLDARVYNNISIIGFRKFSYSELKKATKNFNQEIGRGVGGVVYKGVLLDERVIAMKKLAEANQGEEQFLAEVSSIGSLNHMNLIELWGYCAEGKHRMLVYEFMENGSLAEHLRSNGLNWSKRFDIALGTAKAWRSSHNIFKAVHSLGGIGGTIITHEQVGKTFW 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03646 225 SMART tyrkin_6 89 224 IPR020635 GO:0004713|GO:0006468
Vifa2g03646 225 ProSiteProfiles Protein kinase domain profile. 89 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03646 225 Pfam Protein kinase domain 92 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03646 225 ProSitePatterns Protein kinases ATP-binding region signature. 95 117 IPR017441 GO:0005524
Vifa2g03646 225 Gene3D Phosphorylase Kinase; domain 1 57 163 - -
Vifa2g03646 225 FunFam S-receptor-like serine/threonine-protein kinase 58 163 - -
Vifa2g03646 225 PANTHER OS07G0415500 PROTEIN 27 193 - -
Vifa2g03646 225 SUPERFAMILY Protein kinase-like (PK-like) 69 198 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03646 Vifa-Chr2 1063355795 1063356472 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03646 58 199 Receptor kinase-like Gene Family AT1G66910 37.241 1.29e-28 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa2g03646 Pkinase 2.3e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03646 - - gmx:100792388 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03646 2 1063355795 1063356472 Vifa2g03646 2 1063355795 1063356472 ECH