Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03644 ATGAAAATCCAAAGCTGCTGCTTCTTCTTCTTTCTCTTCTTATTCACCAATACTATTTCATTATCATCAACAACAAACACACTTCAACAAGGCTCATCTCTTTCAGTTGAGAAACCAAATGACACCCTCGTTTCATCCAACCGCGATTTCTCCGCGGGTTTCTTCCCGGTCGGAGACAACGCTTTCTGTTTCTCCGTCTACTTCACAAAATCCAAACAACCGTTGGTTGTTTGGATGGCCAACCGAGACCAACCCGTAAACGGAAAATACTCAAAACTCTCACTTTCTAAATACGGTAACCTCATTTTAACCGATGCAAAAAGAAAAAAATCACCCTGGTCTATTTCAAATACTTCTCCTTTTCCTTTACAGTTAAAGCTTCGAAACAACGGTAACCTTGTCCTCGAAACGGTTAACAGCAACGTTACTGTCATTTGGCAAAGTTTTGATTCTCCAACGGATACACTTTTACTTGGCCAACAAGTTACAGAACAGGCAAGCTTAATTTCATCCAAAAGCGAAAAAAACTATTCCACAGGCTTCTATAAACTATATTTCGACAACGACAACGCTCTTCGTCTTCTTTTCAAAGGTCCTTTGTTATCTAGCGTCTACTGGCCAGCACCTTGGCAATTACCAATTGATGCAGGAAGATCAACCTATAATGTTTCTAAAACCGCGCAACTCGATTCTTTAGGTCATTTTATATCCTCTGATGCATTCGAATTTTTCACGAGTGATTATCCTAAAAGAGTTCGGAGATTACTCAAAATGGACCATGATGGTAACTTCCGTGCTTACAGCTTCAATGAGAAAACTAAGACATGGGAAGTATCATGGCAAGCTTTTCCTGAACCGTGTTCGGTTCACGGTCTTTGCGGAGAAAATGGCATCTGTACTTATCATCCTGTTAATGGAAGAACATGTTATTGTTTAAAAGGTTACAAGTTGAAGAATGGTAATGATTGGAGACAAGGGTGTGAGCCTGAGTTTAAACCTTCTGATCTTTCTTGTAATCACGGTGAGTCTTTCGGTTTTCTTCATCTTCAAAACATGGAATTGTATGGCTATGATCTGAAAGTAGTAAAAGTTACAAGCGTGAAGCAATGTCAACAAGTATGTTTGGATCTTTGTGAGAAATGCAAAGGTGTTCAATTCAAATTCAACCGCGATTCTACTTATGATTGTTTTCCTAAATCATTGTTGGTCAATGGAAGAGATTCTCATAATATTGATGGAGATGTTTATCTGAAATTGCCAAGAGTTACTTTGTTAGATTCAACTATGCCAGTTAAACATACACCTATGAAGTGTTCCATTGAAAATTCGTCGCAAACCTTGAATAGATTCTATGAGAAACCAAGTAAAAACTCAACTTTGAGTTTCTTAACTTGGGTTGCATATGGAATAGGAGTGTTTGAAATCTCCATAGTTTTCTTTGTTTGGTTCTTTTTGTTTAGAACCAATAAGAATCATGGTGATAATGTTGATCAAATACAAAGACACCTTCTATCCGCGACAGGTTTTCAAAGATTTTCCTACTCAGAACTAAAAATCGCGACCGAGGGTTTCACTAAAGAGATCGGTCGAGGAGGAGGAGGGGTTGTTTACAAAGCTATACTCGATGATGATCGTGTTGCAGCTGTTAAACAATTAAATGTAGCGGATCAAGGAGAAGCCGAGTTTCTAGCCGAGATAAGCACTATTGGTATGTTGAACCACATGAACTTGATTGATATGTGGGGATATTGTGTCGAAGGGAAGCATAGGATTTTGGTTTATGAGTTCATGGAACATGGTTCTTTAGCAGAAAAGCTTTCTTCCAATTCACTTGATTGGAACAAAAGGTTCAATGTAGCTCTTGGAACAGCTAAAGGCTTGGCCTATTTACATGAAGAGTGTTTAGAATGGGTTTTACATTGTGATGTGAAGCCTCAAAATATTCTACTAGACACAAATTTTCAACCAAAAGTAGCTGATTTCGGTTTATCAAAGCTTTTGAATAGAGATGAACGTGTTAGTTCAGCTTTTTCAAGGATTAGAGGGACAAGAGGCTATATGGCACCAGAATGGGTTTATAATCTTAGAATCACTTCTAAGGTTGATGTTTATAGTTATGGGATTGTGTTGCTTGAAATGGTGAGTGGAAAAAGTCCAATGGAAATCCATAGTCTTGATAATAGTGGAGGTATAGAGCATCAAAGAATGGTGAGCTGGTTTATGGATAAAGTGAAAAATGCACCTACGACTATGGTTTGGATTGAGGAGATTGTTGATGGGAATTTGGAAGGGAAATATGATGTTAATCAAGTTGAGAATTTGGTTAGAGTTGCTTTGAAGTGTGTGAAAGATGACATGAATGAGAGACCATCTATGAGTCAAGTTGTTGAGATGCTTCTTCAGTCACACGAAAAAGTTAGAGGACAACCTCGTTAG 2436 0.3814 MKIQSCCFFFFLFLFTNTISLSSTTNTLQQGSSLSVEKPNDTLVSSNRDFSAGFFPVGDNAFCFSVYFTKSKQPLVVWMANRDQPVNGKYSKLSLSKYGNLILTDAKRKKSPWSISNTSPFPLQLKLRNNGNLVLETVNSNVTVIWQSFDSPTDTLLLGQQVTEQASLISSKSEKNYSTGFYKLYFDNDNALRLLFKGPLLSSVYWPAPWQLPIDAGRSTYNVSKTAQLDSLGHFISSDAFEFFTSDYPKRVRRLLKMDHDGNFRAYSFNEKTKTWEVSWQAFPEPCSVHGLCGENGICTYHPVNGRTCYCLKGYKLKNGNDWRQGCEPEFKPSDLSCNHGESFGFLHLQNMELYGYDLKVVKVTSVKQCQQVCLDLCEKCKGVQFKFNRDSTYDCFPKSLLVNGRDSHNIDGDVYLKLPRVTLLDSTMPVKHTPMKCSIENSSQTLNRFYEKPSKNSTLSFLTWVAYGIGVFEISIVFFVWFFLFRTNKNHGDNVDQIQRHLLSATGFQRFSYSELKIATEGFTKEIGRGGGGVVYKAILDDDRVAAVKQLNVADQGEAEFLAEISTIGMLNHMNLIDMWGYCVEGKHRILVYEFMEHGSLAEKLSSNSLDWNKRFNVALGTAKGLAYLHEECLEWVLHCDVKPQNILLDTNFQPKVADFGLSKLLNRDERVSSAFSRIRGTRGYMAPEWVYNLRITSKVDVYSYGIVLLEMVSGKSPMEIHSLDNSGGIEHQRMVSWFMDKVKNAPTTMVWIEEIVDGNLEGKYDVNQVENLVRVALKCVKDDMNERPSMSQVVEMLLQSHEKVRGQPR 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03644 811 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Vifa2g03644 811 SMART blect_4 34 152 IPR001480 -
Vifa2g03644 811 Pfam S-locus glycoprotein domain 250 318 IPR000858 GO:0048544
Vifa2g03644 811 CDD B_lectin 38 152 IPR001480 -
Vifa2g03644 811 SMART ntp_6 341 419 IPR003609 -
Vifa2g03644 811 FunFam Serine/threonine-protein kinase 597 807 - -
Vifa2g03644 811 Gene3D Phosphorylase Kinase; domain 1 487 596 - -
Vifa2g03644 811 Pfam Protein kinase domain 526 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03644 811 SUPERFAMILY Protein kinase-like (PK-like) 501 799 IPR011009 -
Vifa2g03644 811 FunFam S-receptor-like serine/threonine-protein kinase 490 596 - -
Vifa2g03644 811 CDD PAN_AP_plant 335 420 - -
Vifa2g03644 811 Gene3D Transferase(Phosphotransferase) domain 1 597 809 - -
Vifa2g03644 811 PIRSF SRK 1 811 IPR024171 GO:0004674
Vifa2g03644 811 PANTHER OS07G0415500 PROTEIN 7 801 - -
Vifa2g03644 811 Pfam D-mannose binding lectin 76 163 IPR001480 -
Vifa2g03644 811 ProSiteProfiles PAN/Apple domain profile. 338 420 IPR003609 -
Vifa2g03644 811 ProSiteProfiles EGF-like domain profile. 283 321 IPR000742 -
Vifa2g03644 811 CDD STKc_IRAK 528 799 - -
Vifa2g03644 811 ProSiteProfiles Bulb-type lectin domain profile. 19 148 IPR001480 -
Vifa2g03644 811 ProSiteProfiles Protein kinase domain profile. 522 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03644 811 Gene3D - 20 150 IPR036426 -
Vifa2g03644 811 SMART serkin_6 522 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03644 811 ProSitePatterns Protein kinases ATP-binding region signature. 528 550 IPR017441 GO:0005524
Vifa2g03644 811 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 207 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03644 Vifa-Chr2 1063043988 1063046423 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03644 479 799 Receptor kinase-like Gene Family AT1G60800 37.725 3.02e-63 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa2g03644 Pkinase 6e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03644 - - gmx:100816469 1105.51