Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03640 ATGTCTCACACTTTCCTCATTGATACCTTGTACTGCTCCGAAGAACACTGGGAGGAACAAGATGAGTTAGAATTCGAGTACAATAATGTTTCCTTAAACAACACAATAACAAACTCTACTCAATCTTTGTTCCTAGAAACCGACATGTTTTGGGACGATGAAGAACTCAAATCACTTCTCTCCAAAGAACAACAAAACCCTCTTCACATCTTCCTCCAAACCAACCCTGTGTTGGAATCTTCGCGTAGAGAATCCATTCACTGGATTCTGAAAGTCAATGCTCATTACTCCTTCTCACCTCTCACAGCTGTTCTTGCTGTCAACTACCTCGATAGGTTTCTCTTCAGCTTCCGGTTTCAGAATGACAAGCCATGGATGACTCAGCTTTCTGCTGTTGCTTCTCTCTCTCTTGCTGCTAAACTTGAAGAAACCCAAGTTCCTCTTTTACTAGATCTTCAAGTTGAGGAAAGTAGATACTTGTTTGAAGCAAAGACGATAAAAAAGATGGAGATTTTGATTCTTTCAACACTTGGGTGGAAGATGAATCCAGCAACACCTCTTTCTTTTATTGATTATATGATAAGAAGACTTGGATTGAAAGATCTTCTTTGTTGGGAGTTTCTTCATAGATGTCAAGATGTTGTTCTTTCTGTCCTTAGATCAGATTCAAAGTTTATGAGTTATCTACCTTCTGTTTTGGCAACTGCTGCAATGATTCATGTTTTCAACAGTGTTGACCCTAGTTTAGGAGATGAATACAAAAACCAGCTTCTAAATATTCTTGGAATCAACAAAGAAAAAGTGGATGAATGTGGGAAGCTGATGATGAAACTTTGGTCAGAATATGGAGAAGAGAATGAGAATCAATTGAACAAACGTAAATTTGACTCAATTCCAAGTAGTCCAAATGGTGTAATGGATGTGTCATTTAGCTGTGAAAATTCCAATGATTCATGGGCTGTAGCAGCAACAGTTTCAGTATCATCTTCACCAGAGCCTTTGTCAAAGAGGATCAAAATTAAGAAAAGTCTCTATTAA 1038 0.3796 MSHTFLIDTLYCSEEHWEEQDELEFEYNNVSLNNTITNSTQSLFLETDMFWDDEELKSLLSKEQQNPLHIFLQTNPVLESSRRESIHWILKVNAHYSFSPLTAVLAVNYLDRFLFSFRFQNDKPWMTQLSAVASLSLAAKLEETQVPLLLDLQVEESRYLFEAKTIKKMEILILSTLGWKMNPATPLSFIDYMIRRLGLKDLLCWEFLHRCQDVVLSVLRSDSKFMSYLPSVLATAAMIHVFNSVDPSLGDEYKNQLLNILGINKEKVDECGKLMMKLWSEYGEENENQLNKRKFDSIPSSPNGVMDVSFSCENSNDSWAVAATVSVSSSPEPLSKRIKIKKSLY 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03640 345 SMART Cyclin_C_2 184 314 IPR004367 -
Vifa2g03640 345 Pfam Cyclin, C-terminal domain 185 312 IPR004367 -
Vifa2g03640 345 SUPERFAMILY Cyclin-like 166 284 IPR036915 -
Vifa2g03640 345 SMART cyclin_7 87 175 IPR013763 -
Vifa2g03640 345 ProSitePatterns Cyclins signature. 82 113 IPR006671 -
Vifa2g03640 345 FunFam D3-type cyclin 75 182 - -
Vifa2g03640 345 CDD CYCLIN_AtCycD-like_rpt2 185 275 - -
Vifa2g03640 345 Pfam Cyclin, N-terminal domain 63 182 IPR006671 -
Vifa2g03640 345 PANTHER CYCLINS 55 277 IPR039361 -
Vifa2g03640 345 Gene3D - 59 272 - -
Vifa2g03640 345 CDD CYCLIN_AtCycD-like_rpt1 82 179 - -
Vifa2g03640 345 Gene3D - 69 182 - -
Vifa2g03640 345 SUPERFAMILY Cyclin-like 49 182 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03640 Vifa-Chr2 1060478359 1060479702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03640 2 278 Core Cell Cycle Gene Families AT4G34160 51.625 2.54e-93 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03640 K14505 - tcc:18591134 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03640 2 1060478359 1060479702 Vifa4g02654 4 818797044 818798545 ECH
Vifa2g03640 2 1060478359 1060479702 Vifa3g03397 3 974260342 974261979 ECH
Vifa2g03640 2 1060478359 1060479702 Vifa2g03640 2 1060478359 1060479702 ECH