Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03635 ATGAGCACTCCTCCTCTAAAACACATTTCTGAATGCTTCATCAAACCACATCCCCCAATCGAAGACTCGAATCAAATATGCTATTTAGCACCTTGGGATATTGCCATGTTATCTGTCAACTATATCCAAAAGGGACTTCTCTTCAAAAAACCAACATCATCATTGGTTAATCAACCAGATTTTATCGAGAATCTGTTGATAAAACTCAAACGCTCTCTTTCTCTCACACTTTTCCATTTCTATCCCCTCTCAGGTCGTCTTGTTACACACAAAACCCAAGATCCTCCTTCGTACACTGTTTTTGTCGATTGTAGAAACAGTCCCGGAGCTAAATTCATCTATGCTACTTTAGATATCACCATAGATGATATCCTATCCCCCATTGACGTCCCACCTATTGTTCAATCGTTTTTTGATCACCACAAAGCAGTCAACCATGATGGTCACACCATGTCTTTGTTGTCTATCCAAGTCACTGAATTATTGGATGGTGTTTTCATAGGTTGTTCCATGAACCACTCTATTGGTGATGGAACTGCTTATTGGAATTTCTTTAACACACTTTCTGACACATTTCAAAATGATGCTAGTCTTCTTGATCCCATTTCACACCAACCAATTCACAATAGGTGGTTTCCAGAAGGTTATGGCCCAATTATCAACCTTCCCTTCAAACATCATGACGAGTTTATTCACAGGAATGAAACACCCATTTTGAGAGAAAGAATCTTCCATTTCTCAGCCGAGTCTATAGCAAAACTTAAAGCAAAGGCAAACAAAGAGTGTAAGACAACAAAAATCTCTTCTTTCCAATCACTATCAGCACTAGTTTGGAGATCTATAACTCGTGCACGTCAACTACACCATGATCAGAGAACTACTTGCAAATTGGCTATAAACAACCGAACAAGAATGGAGCCACCACTTCCTATGGAATATTTTGGGAATTCAATTCATGCAGTGAGTACCGAAACAACAACGGTAAAGGACTTGCTAGAGAATGATCTAGGATGGGCAGCTTGGGAGGTTCATATGGCTGTTGCAAATCATGATGATAAAGTGGTGCGGGGATCCGTGGAAAAGTGGTTACAGTCTCCTATTGTGTATCGAGGGGATCTACTCTTTGATCGTTATACTGTGTTGATGGGTAGTTCACCGAGGTTTAATATGTATGGGAATGAATTTGGAATGGGGAAAGCATTAGCTGTTAGAAGTGGATATGCTAACAAATTTGATGGGAAAATAACATCATATCCAGGACAAGAAGGAGGAGGGAGTATAGATCTTGAAGTGTGTCTTTTACCAGACAAAATGATTGCCCTGGAATCGGACGAAGAGTTCATGAATTCAGTTTCAGTGTTTAATCATTTGTTCTAG 1377 0.3965 MSTPPLKHISECFIKPHPPIEDSNQICYLAPWDIAMLSVNYIQKGLLFKKPTSSLVNQPDFIENLLIKLKRSLSLTLFHFYPLSGRLVTHKTQDPPSYTVFVDCRNSPGAKFIYATLDITIDDILSPIDVPPIVQSFFDHHKAVNHDGHTMSLLSIQVTELLDGVFIGCSMNHSIGDGTAYWNFFNTLSDTFQNDASLLDPISHQPIHNRWFPEGYGPIINLPFKHHDEFIHRNETPILRERIFHFSAESIAKLKAKANKECKTTKISSFQSLSALVWRSITRARQLHHDQRTTCKLAINNRTRMEPPLPMEYFGNSIHAVSTETTTVKDLLENDLGWAAWEVHMAVANHDDKVVRGSVEKWLQSPIVYRGDLLFDRYTVLMGSSPRFNMYGNEFGMGKALAVRSGYANKFDGKITSYPGQEGGGSIDLEVCLLPDKMIALESDEEFMNSVSVFNHLF 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03635 458 Gene3D - 7 220 IPR023213 -
Vifa2g03635 458 Gene3D - 226 443 IPR023213 -
Vifa2g03635 458 FunFam Tryptamine hydroxycinnamoyl transferase 225 444 - -
Vifa2g03635 458 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 449 - -
Vifa2g03635 458 Pfam Transferase family 9 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03635 Vifa-Chr2 1057312204 1057313580 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03635 69 442 Monolignol Biosynthesis Gene Families AT5G48930 28.061 2.47e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03635 - - gmx:100787228 706.827