Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa2g03634 | ATGGCGCAAGTTCACGAGAGTTCCAACAATGACGCTGCTGCTCCGGTTCCCAATCATCTGACCACGACGTCGCTGTACGTCGGAGATCTCGATCATGACGTCAATGATTCGCAGATTTACGATCTTTTCAATCAGATCGGTCAGGTTGTTTCTGTTCGGATCTGTAGGGATTTGGCTTCTCAGCAATCCCTAGGTTACGGTTATGTCAATTTCAGTAACCCTCATGACGCTGCAAAGGCTATGGATGTGCTGAATTTCACTCCACTGAACAACAAACCGATTAGGATAATGTATTCTCATCGGGACCCTAGTGTTCGCAAGAGTGGTGCTGCAAATATTTTCATCAAGAATTTGGATAAGGCAATCGATCACAAGGGTTTGTATGATACTTTTTCGGTTTTTGGAAGTATTCTCTCTTGCAAGATAGCAATGGATGCTTCTGGCCTGTCTAAAGGCTATGGTTTTGTGCAATTTGAGAATGAAGAGTCTGCACAAAGTGCAATTGATAAGTTAAACGGCATGCTGATTAATGATAAGCCTGTTTATGTTGGTCATTTCCAACGGAAGCAGGATAGAGATAACACCTTGAGTACTGCAAAGTTTAATAATGTCTATGTGAAAAATCTGTCAGAGGCAGTTGCTGATGATGACTTGAAGAGCATTTTTGGAGAATATGGAACTATTACTAGTGCTGTAGTAATGAGAGATGTAGATGGTAAATCGAAATGTTTTGGTTTTGTCAATTTTGAAAATGCAGATGCTGCTGCTAAAGCTGTGGAGGCACTTAATGGAAAGAAATTTGATGACAAGGAGTGGTATGTTGGAAAAGCCCTGAAAAAGTATGAAAGGGAGCTTGAACTGAAAGAAAGACATGAGCAGAGTATAAAGGAAACTGTGGACAAATATTATGGTGCCAACTTGTATCTCAAAAACTTGGATGATAGTGTCAGCGATGAAAAGCTTAGCGAACTCTTCTCTGAGTTTGGTACAGTAACTTCATGCAAGATTCTGCGAGATCCACAGGGAATCAGTAGGGGATCCGGATTTGTTGCCTTTTCAACTCCCGAGGAAGCAACTCGAGCTCTTGCTGAGATGAATGGAAAAATGGTTGCTGGCAAACCTCTCTACGTCGCTCCTGCACAGAAAAAGGAAGAGAGAAAAGCAAGGTTACAGGCACAATTTTCACAAGTGAGGCCGGTTGCAATGGCTCCTATTGCACCACGAATGCCATTTTACCCCGGGGGAGTTCCAGGGATGGGACAACAAATCATGTATGGCCAAGCTCCTCCAGCCTTCATATCTCAGGCTGGATTTGGTTACCCGCAGCAACTGGTCCCTGGAATGAGACCAGGTGGTGCTCCAATGCCAAACTTCTTTGTGCCCATGGGTCAGCAGGGTCAACAAGGCCAGCGTCCTGGCGGACGGCGAGGTGCAGGTCCTATTCATCAACTCCCACAGTCATTGCCAATGATGCAGCAACAGATGCTTCCAAGGGGACGCGTCTACCGATACCCTCCTCCTGGTCGCAACCTGCAAGGTATTCCGCTGCCAGGAGTAACGGGAGGAACACCCATTCAGGCTCTGGCTACAGCCCTTGCAAATGCTCCTCCTGAACAGCAGAGGACTATGCTTGGTGAAGTTTTATACCCGCTAGTAGAAAAGATTGAACACGGTGGAGCTGCAAAGGTTACTGGGATGCTTTTGGAAATGGATCAGCCTGAGGTGTTGCATCTGATTGAGTCACCAGAGGCTCTAAAGACTAAAGTTGCTGAGGCCGTGGAAGTGCTGAGAAATGTTGCACAGCAGCAATCAAACAGCCCAGCTGATCAACTGGCTTCTCTCTCTCTTAATGACAATCACGAGTCTTAG | 1869 | 0.4569 | MAQVHESSNNDAAAPVPNHLTTTSLYVGDLDHDVNDSQIYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDKAIDHKGLYDTFSVFGSILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLINDKPVYVGHFQRKQDRDNTLSTAKFNNVYVKNLSEAVADDDLKSIFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAKAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQSIKETVDKYYGANLYLKNLDDSVSDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQKKEERKARLQAQFSQVRPVAMAPIAPRMPFYPGGVPGMGQQIMYGQAPPAFISQAGFGYPQQLVPGMRPGGAPMPNFFVPMGQQGQQGQRPGGRRGAGPIHQLPQSLPMMQQQMLPRGRVYRYPPPGRNLQGIPLPGVTGGTPIQALATALANAPPEQQRTMLGEVLYPLVEKIEHGGAAKVTGMLLEMDQPEVLHLIESPEALKTKVAEAVEVLRNVAQQQSNSPADQLASLSLNDNHES | 622 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa2g03634 | 622 | Gene3D | - | 521 | 603 | - | - | |
Vifa2g03634 | 622 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 305 | 382 | IPR000504 | GO:0003723 | |
Vifa2g03634 | 622 | SMART | rrm2_1 | 306 | 378 | IPR003954 | GO:0003676 | |
Vifa2g03634 | 622 | SMART | rrm2_1 | 24 | 97 | IPR003954 | GO:0003676 | |
Vifa2g03634 | 622 | SMART | rrm2_1 | 112 | 184 | IPR003954 | GO:0003676 | |
Vifa2g03634 | 622 | SMART | rrm2_1 | 203 | 275 | IPR003954 | GO:0003676 | |
Vifa2g03634 | 622 | CDD | RRM4_I_PABPs | 304 | 382 | - | - | |
Vifa2g03634 | 622 | PANTHER | RNA BINDING PROTEIN | 22 | 85 | - | - | |
Vifa2g03634 | 622 | CDD | RRM2_I_PABPs | 109 | 185 | IPR045305 | - | |
Vifa2g03634 | 622 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 524 | 601 | IPR002004 | GO:0003723 | |
Vifa2g03634 | 622 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 23 | 101 | IPR000504 | GO:0003723 | |
Vifa2g03634 | 622 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 111 | 188 | IPR000504 | GO:0003723 | |
Vifa2g03634 | 622 | Pfam | Poly-adenylate binding protein, unique domain | 532 | 596 | IPR002004 | GO:0003723 | |
Vifa2g03634 | 622 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 113 | 181 | IPR000504 | GO:0003723 | |
Vifa2g03634 | 622 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 307 | 375 | IPR000504 | GO:0003723 | |
Vifa2g03634 | 622 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 25 | 95 | IPR000504 | GO:0003723 | |
Vifa2g03634 | 622 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 204 | 272 | IPR000504 | GO:0003723 | |
Vifa2g03634 | 622 | FunFam | Polyadenylate-binding protein | 192 | 287 | - | - | |
Vifa2g03634 | 622 | SMART | poly_2 | 536 | 599 | IPR002004 | GO:0003723 | |
Vifa2g03634 | 622 | Gene3D | - | 105 | 195 | IPR012677 | - | |
Vifa2g03634 | 622 | FunFam | Polyadenylate-binding protein | 10 | 111 | - | - | |
Vifa2g03634 | 622 | CDD | RRM1_I_PABPs | 24 | 103 | IPR034364 | - | |
Vifa2g03634 | 622 | Coils | Coil | 278 | 298 | - | - | |
Vifa2g03634 | 622 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 202 | 279 | IPR000504 | GO:0003723 | |
Vifa2g03634 | 622 | Gene3D | - | 2 | 104 | IPR012677 | - | |
Vifa2g03634 | 622 | Gene3D | - | 196 | 302 | IPR012677 | - | |
Vifa2g03634 | 622 | Gene3D | - | 303 | 398 | IPR012677 | - | |
Vifa2g03634 | 622 | SMART | rrm1_1 | 203 | 275 | IPR000504 | GO:0003723 | |
Vifa2g03634 | 622 | SMART | rrm1_1 | 306 | 378 | IPR000504 | GO:0003723 | |
Vifa2g03634 | 622 | SMART | rrm1_1 | 24 | 97 | IPR000504 | GO:0003723 | |
Vifa2g03634 | 622 | SMART | rrm1_1 | 112 | 184 | IPR000504 | GO:0003723 | |
Vifa2g03634 | 622 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 24 | 597 | IPR006515 | GO:0003723 | |
Vifa2g03634 | 622 | FunFam | Polyadenylate-binding protein | 520 | 602 | - | - | |
Vifa2g03634 | 622 | SUPERFAMILY | RNA-binding domain, RBD | 23 | 192 | IPR035979 | GO:0003676 | |
Vifa2g03634 | 622 | SUPERFAMILY | RNA-binding domain, RBD | 202 | 386 | IPR035979 | GO:0003676 | |
Vifa2g03634 | 622 | SUPERFAMILY | PABC (PABP) domain | 488 | 614 | IPR036053 | GO:0003723 | |
Vifa2g03634 | 622 | MobiDBLite | consensus disorder prediction | 601 | 622 | - | - | |
Vifa2g03634 | 622 | FunFam | Polyadenylate-binding protein | 112 | 185 | - | - | |
Vifa2g03634 | 622 | FunFam | Polyadenylate-binding protein | 288 | 393 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa2g03634 | Vifa-Chr2 | 1057306974 | 1057311192 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa2g03634 | 22 | 619 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 65.120 | 0.0 | 783 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa2g03634 | K13126 | - | gmx:100784442 | 915.605 |