Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03632 ATGGTGATGGAAGAAGAAAGAGATTGTTGTTCAACAATAACACTGAACAGAAGCAACAACAACATCAACCCCAAAGAGAATCACAAACAAGAGAAACCATACAGAGGAATAAGGAAGAGAAAGTGGGGAAAGTGGGTTGCAGAAATACGAGAACCAAACAAAAGATCAAGAATCTGGTTAGGTTCTTACACCACACCCGTAGCCGCCGCACGTGCCTACGACACCGCCGTATTCTACCTAAGAGGCCCGACGGCTCGCCTTAATTTCCCCGAATTATTGTTCCAAGACGATGAAGACAACAGCATCAACACCAACGGTTCTGTTCCACAAGGTAACATGTCCGCTGATTCAATACGCAGAAAAGCCACCACTGTCGGTGCTAGAGTTGATGCTCTTCAAACCGCTCTTCAAGCTTCATCACGTTCCAGTTCTACTCACTCTGATGTTAAACCTGATTTGAACGAGTTTCCAAAACCTGAAGATTATTAA 489 0.4438 MVMEEERDCCSTITLNRSNNNINPKENHKQEKPYRGIRKRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPELLFQDDEDNSINTNGSVPQGNMSADSIRRKATTVGARVDALQTALQASSRSSSTHSDVKPDLNEFPKPEDY 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03632 162 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Vifa2g03632 162 MobiDBLite consensus disorder prediction 136 150 - -
Vifa2g03632 162 MobiDBLite consensus disorder prediction 136 162 - -
Vifa2g03632 162 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Vifa2g03632 162 PRINTS Ethylene responsive element binding protein signature 72 92 IPR001471 GO:0003700|GO:0006355
Vifa2g03632 162 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Vifa2g03632 162 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700|GO:0006355
Vifa2g03632 162 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 18 161 - -
Vifa2g03632 162 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Vifa2g03632 162 FunFam Ethylene-responsive transcription factor 2 32 91 - -
Vifa2g03632 162 Pfam AP2 domain 34 82 IPR001471 GO:0003700|GO:0006355
Vifa2g03632 162 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03632 Vifa-Chr2 1056934289 1056934777 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03632 32 161 AP2-EREBP Transcription Factor Family AT2G23340 57.639 5.78e-49 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa2g03632 AP2 9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03632 K09286 - gmx:100801528 213.386