Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03627 ATGCGGAAGCGCGCATACGCTAGAAAGACGTATAAGCAAGCCTTTCTTTATGAGTATGAGTCAACCAAGCCGCTTCAGAGAGGTCCCTCAACTCTCTCAACAGTCCAAGGCATATGCTGCTGCCGTACAGTGAATCAAAACTATGCAAATATTCTTTTGATGCTTTTACGTCTCCGTCAGGCTTGTGATCACCCACTTCTTGTTAAAGAATACAATTCTGATCCTGTTGGAAAAGATTCTGTTGAAATGGCAAAAAGGCTTCCAAAAGAGATGCTGATAAATCTGTTTAATAGTTTGGAAACAACTGCCGCTATATGTTTTGTCTGCAATAGGCCAGAGAATAAGCTTGGAGATGATGAAACGTGGGATAGGGCTGAAAGTGCTCTCAAGGAGGCTTTGGATGAGTTTGGCAAGCCATGGCAGTTGAATGAAGGGGATGGTGCATTCTATGGACCAAAGATAGATATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTCTACAGCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGATGAAGCCAAAATTGAGAGGCCTGTTATGATACACAGAGCCATTCTAGGATCAGTTGAACGCATGTTTGCCATACTTTTAGAGCACTACAAGGGTAAATGGCCCTTCTGGCTCAATCCTCGTCAAGCAATTTTGTGCCCTGTTTCTGAGAAATCACAAGCTTATGCTCTGAAGGGATTGGAATCACCCGCTGATGGTAGACGTTCATCTGAGTCTAGCTACCGTATTGGAGATAATGGAACTTCAGGGGGGACAAATTAG 825 0.4352 MRKRAYARKTYKQAFLYEYESTKPLQRGPSTLSTVQGICCCRTVNQNYANILLMLLRLRQACDHPLLVKEYNSDPVGKDSVEMAKRLPKEMLINLFNSLETTAAICFVCNRPENKLGDDETWDRAESALKEALDEFGKPWQLNEGDGAFYGPKIDISVSDALSRKFQCATLQLDFQLPDRFKLEFSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPFWLNPRQAILCPVSEKSQAYALKGLESPADGRRSSESSYRIGDNGTSGGTN 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03627 274 MobiDBLite consensus disorder prediction 248 274 - -
Vifa2g03627 274 SUPERFAMILY Class II aaRS and biotin synthetases 90 215 IPR045864 -
Vifa2g03627 274 MobiDBLite consensus disorder prediction 254 274 - -
Vifa2g03627 274 Gene3D Bira Bifunctional Protein; Domain 2 77 221 IPR045864 -
Vifa2g03627 274 PRINTS Threonyl-tRNA synthetase signature 196 209 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa2g03627 274 PRINTS Threonyl-tRNA synthetase signature 152 180 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa2g03627 274 PRINTS Threonyl-tRNA synthetase signature 223 235 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Vifa2g03627 274 SUPERFAMILY Class II aaRS ABD-related 216 246 - -
Vifa2g03627 274 Gene3D - 222 253 IPR036621 -
Vifa2g03627 274 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 114 218 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vifa2g03627 274 PANTHER THREONINE-TRNA LIGASE 110 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03627 Vifa-Chr2 1054966036 1054969417 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03627 43 112 RAD5 or RAD16-like Gene Family AT1G50410 68.571 1.68e-23 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03627 K01868 - gmx:100812652 263.462