Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03624 ATGGCAACAAAGAAAAACCACTCAACCAAATGGGTAATCCTCTCACTGTTACTCCTCTCAACTACACTCTCCAACTCCTCCAAACTCAAAACAACACCTTCACCTCATTCAGATCCTACTTCCCTCTTAGCATTCAAATCAAAAGCTGACATAAACAACCACCTCAACTTCACCACCAAAACCCCTTTCTGCAACTGGCAAGGTGTACAATGCAACGGACCCAAAGTAGTCCGTCTCATCCTCCGAAACATAGATCTCGCCGGCGTCTTCGCTCCTCACACATTAACCCTCCTCGACCAGCTCCGTGTTCTCAGTTTACAGAACAACTCCCTCACCGGAACCATTCCTGACCTCTCCGGTCTCTTCAATCTCAAAACGCTCTTCCTTGATAACAACCACTTCACCGGTTCACTTCCACTTTCTCTTTTCTCTCTTCACAGAATTAAAACTATAGATTTCTCTCACAACAATCTCTCTGGGGATATACCTGTAGATTTCATAAACCTTGACCGGCTTTATTATCTTCGTCTAAGCTTCAACTCTTTCAACGGTACTATTCCTCCTTTTAATCAGTCTTCTCTCCGAACTTTTGATGTCTCCGGTAACAATCTCTCCGGCGCAGTTCCGTTAACCACCGCGCTATCGCGTTTTCAGCCGTCTTCTTTCGCTTTAAACCCTAATCTCTGCGGAGAAATTATTCGGAGAGAATGTCGTCCTACAACGCCGTTCTTTGCTCCTACCTCATCTCCGACGGTTGGAATCGGTCAGAGCGCGGATGTTCACGGTTTAATCCGGCAGCCGTACGAGAAGAAACACAAACACAATCGGAAAGCGGTGATTATCGGATTCTCCACCGGAATCATTTTTCTAATACTTTCCTTGACATGTTTCGCGGTGGTGGTTAAGAAACAAAGAAAGAAAAATGGTAAAGGCTCTTCCGGTTCGAGCGTGATGGCTTCGGATGCAGCGGCAACGGCGGAAGCTGCGGTTGTGATGCAAATGGAGCAAGAGAGGGAGTTAGAGGAAAAGGTGAAAAGAGCTCAAGTTGCTAAGAGTGGGAGTTTAATATTCTGTGCGGGTGAGTCGCAGGTGTATACGCTGGACCAGTTGATGAAAGGTTCCGCGGAGCTTTTAGGTAGAGGGTGTTTGGGTACAACTTACAAAGCAGTGTTGGATAACCGTTTGATTGTAACGGTGAAGCGTTTTGATTGTGGGAAAATGGGTGGACACGTAAGCAAAGAGGTGTTTGAGCGTCACATGGAATCAGTTGGTGGTCTTCGGCATCCAAATTTGGTTCCTCTTAGAGCTTATTTTCAAGCAAATCATGAGAGACTCATTATCTATGATTATCAGCCCAATGGCAGTTTATTCTCCCTCATACATGGTTCCAGATCAAGCAGGGCAAGGCCATTGCACTGGACATCATGCTTAAAAATAGCAGAGGACATAGCTCAAGGGCTTTCATACATCCACCAGGCATGGAGACTAGTCCATGGCAATCTCAAATCCACCAATGTTCTCCTAGGACCCGATTTTGAGGCTTGCGTCACAGACTACTGCCTGTCTGTGTTGACCAATCCATCTACCTTTGACGAGAGCTTCTGA 1605 0.4611 MATKKNHSTKWVILSLLLLSTTLSNSSKLKTTPSPHSDPTSLLAFKSKADINNHLNFTTKTPFCNWQGVQCNGPKVVRLILRNIDLAGVFAPHTLTLLDQLRVLSLQNNSLTGTIPDLSGLFNLKTLFLDNNHFTGSLPLSLFSLHRIKTIDFSHNNLSGDIPVDFINLDRLYYLRLSFNSFNGTIPPFNQSSLRTFDVSGNNLSGAVPLTTALSRFQPSSFALNPNLCGEIIRRECRPTTPFFAPTSSPTVGIGQSADVHGLIRQPYEKKHKHNRKAVIIGFSTGIIFLILSLTCFAVVVKKQRKKNGKGSSGSSVMASDAAATAEAAVVMQMEQERELEEKVKRAQVAKSGSLIFCAGESQVYTLDQLMKGSAELLGRGCLGTTYKAVLDNRLIVTVKRFDCGKMGGHVSKEVFERHMESVGGLRHPNLVPLRAYFQANHERLIIYDYQPNGSLFSLIHGSRSSRARPLHWTSCLKIAEDIAQGLSYIHQAWRLVHGNLKSTNVLLGPDFEACVTDYCLSVLTNPSTFDESF 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03624 534 ProSiteProfiles Protein kinase domain profile. 372 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03624 534 Pfam Protein kinase domain 376 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03624 534 SUPERFAMILY L domain-like 38 228 - -
Vifa2g03624 534 ProSiteProfiles Leucine-rich repeat profile. 100 122 IPR001611 GO:0005515
Vifa2g03624 534 Pfam Leucine rich repeat 123 181 IPR001611 GO:0005515
Vifa2g03624 534 Gene3D Ribonuclease Inhibitor 190 239 IPR032675 -
Vifa2g03624 534 Gene3D Ribonuclease Inhibitor 36 189 IPR032675 -
Vifa2g03624 534 SUPERFAMILY Protein kinase-like (PK-like) 376 528 IPR011009 -
Vifa2g03624 534 Gene3D Transferase(Phosphotransferase) domain 1 361 533 - -
Vifa2g03624 534 FunFam Nuclear pore complex protein NUP107 36 188 - -
Vifa2g03624 534 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 527 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03624 Vifa-Chr2 1054556127 1054558972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03624 36 527 Receptor kinase-like Gene Family AT5G43020 59.476 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa2g03624 Pkinase 9.4e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03624 - - cam:101511242 866.685