Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03622 ATGATGAGTTCCTCTATTGTTCAACATGTTTCGGAATGTTTTATCAAACCACTACACCCTATTCCAGAATCAAACCGAATCTGCCATTTGACAACATGGGATATTGCCATGTCGTCTACGAACTACATCCAGAAAGGCCTCTTATTCAAAAAACCAAATAACCAACAACATTTCATCCATAATCTGTTGGAGAAGCTCAATCACTCTCTTTCTCTTGCTCTATTCCATTTCTATCCTCTATCTGGCCGTCTCGTTACACTAAAATCTCAAGATCCTCCATCTTATTCTATTTTCGTCGATTGCAGCAACAATAACCCCGGAGCTAGATTCATCTACGCAACTTTGGATATAACCATATCTGATATCCTCTCCCCAATTGATGTTCCACCGGTTGTTAAGTCATTGTTTGATCTGAACAAAGCAATCAATCACGACGGTCACACTTTGCCTTTGTTATCCATCCAAGTCACTGAGCTAGTAGACGGTCTTTTCATAGGTTGTTCCATGAATCACTGTATCGGCGATGGAACTTCTTTTTGGAAGTTCTTTAATACATGGTCCGAAATATTTCAAGCTCAAGGCCATGGCTATGATCATGATGTCCCCATTTCACGCCAACCCTTTCACAATCGTTGGTTTCCAGAAGGTTATGGTCCGCTAATCAATCTTCCATTCAAACATCAGGACGAGTTTGTAAGCAGATTTAAAGCACCTGAGCTGAGAGAGAGAATCTTCCACTTTACGGCAGAGTCTATTGCAAAACTGAAAGCAAAGGCTAATAGGGAATATAATACAAACAAAATCTCTTCGTTCCAATCCCTATCAGCACATGTTTGGAGAAGTATAACCCGTGCACGCCGCCTAACAAATGATCGAAAAACAAGTTGTATGGTGGCTGTAAACAACCGACCGAGAATGAAACCGCCTCTTCCTGAAGAATACTTTGGGACCTCAGTTGATACAGTGAGTGCAGAAGCGACGGTAGGAGAATTACTTGAGAATGATTTGGGATGGGTAGCGTGGAAGGTTCATGTTGCTGTTACAAAGCATGACGAGTTAGAGATTCGAAAGAGTGTGGAAAAGTGGTTAGAGTATCCTGTTATACTCGACCTTGATCGCCACTATGATCCGTTAAGTGGTGTGGCAATGATAAGTTCGCCTAGGTTCAATATGTATGGGAATGAATTTGGGATGGGGAAAGCAGTGGCTGTTTTGTGTGGTTATGCAAACAAATGTGATGGGAATGTGACTGTATATGAGGGACATGAAGGAGGGGGGAGTATGGATTTGGAAATTTCTCTATCTTCAAATGTTATGATAGAGTTGGAATTGGATGACAACTTTATGAATGCAGTTTCTCTGACCAATATGTCAGGTACTTCTAGAGGACACTCTTAA 1398 0.4127 MMSSSIVQHVSECFIKPLHPIPESNRICHLTTWDIAMSSTNYIQKGLLFKKPNNQQHFIHNLLEKLNHSLSLALFHFYPLSGRLVTLKSQDPPSYSIFVDCSNNNPGARFIYATLDITISDILSPIDVPPVVKSLFDLNKAINHDGHTLPLLSIQVTELVDGLFIGCSMNHCIGDGTSFWKFFNTWSEIFQAQGHGYDHDVPISRQPFHNRWFPEGYGPLINLPFKHQDEFVSRFKAPELRERIFHFTAESIAKLKAKANREYNTNKISSFQSLSAHVWRSITRARRLTNDRKTSCMVAVNNRPRMKPPLPEEYFGTSVDTVSAEATVGELLENDLGWVAWKVHVAVTKHDELEIRKSVEKWLEYPVILDLDRHYDPLSGVAMISSPRFNMYGNEFGMGKAVAVLCGYANKCDGNVTVYEGHEGGGSMDLEISLSSNVMIELELDDNFMNAVSLTNMSGTSRGHS 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03622 465 Gene3D - 226 444 IPR023213 -
Vifa2g03622 465 Gene3D - 2 220 IPR023213 -
Vifa2g03622 465 Pfam Transferase family 10 445 - -
Vifa2g03622 465 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03622 Vifa-Chr2 1053733369 1053734766 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03622 49 443 Monolignol Biosynthesis Gene Families AT5G48930 29.227 3.62e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03622 - - gmx:100775661 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03622 2 1053733369 1053734766 Vifa2g03622 2 1053733369 1053734766 ECH