Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03621 ATGGCTCTTCTACTAGACAATGGTGAAGGTATTTTACTCTCTCTAGACTCACACAAATCAGTCCCAGCACCATTTCTCACCAAAACATACCAACTCGTCGACGATCCCTCCACAGATCACATAGTTTCTTGGGGTGAAGACGACTCCACCTTCGTCGTTTGGCGTCCTCCAGAATTCGCAAGAGACCTTCTCCCAAATTACTTCAAACACAATAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTACGGTTTTAGAAAGATTGTACCTGATAGATGGGAGTTTGCTAATGAATATTTCAAGAAAGGAGAAAAGCATTTGCTATGCGAGATTCATAGAAGAAAAACAACGCAGCCGCAACAAACCGGAATCATGACCCATCACCATCACCACCACCAGCACCAGCACCACAATGTTCCTCCGAGTTTCTTTCCGTTTTCGAACACTAGAGTAAGCATTTCTCCACCTAATGACTACTCCGACGAACATCTCAACAATTGGTCATGTGATTCTCCGCCATTAACTTCACCGTCGTTCATCAATGGAGGCCCAACAACAACAACCACAACCACAGCAACAAACTACACCACTTCTGTTACTGCTCTTTCCGAAGACAATGAAAGACTAAGAAGAAGTAACAACATGTTAATGTCGGAGTTAGCTCACATGAAGAAGCTTTACAATGATATAATCTACTTCGTTCAGAATCATGTTAAGCCTGTAGCTCCAAGTAACTCTTACTCTTCTTCTTATTTACTTCCACATGCTTCTTCAAATCCTAATGCTATCAATGGTGGTGGTAATGTTTCAATGATGCAAAGACCAATGAACCAGATTAACTCTACCAACCCTAAACATGTGACTCAGTTTCAACACCAAACTCAATCTCATCATCAACATCATCATGGTGTGAATGTGAATGTGAATGTGAATGTGAACTCTCCAACAACCACATCAAGAAGCTCTATAACAATGGTGGAAGGTCACAAAAGTAATAACTATAACTGCAGCAAGACAAAGCTTTTTGGAGTATCACTACAGTCCAAGAAAAGAGTGCACCCTGAATGTGGATCTAATAGTCCAACTAACTTGGAAACCAACAAGACTCGTTTGGTTTTGGATCAAAAAGATGATTTTGATTTTGATTTGGGTTTGAATCTCATGCCTCCATCCACTTGTTAA 1182 0.4103 MALLLDNGEGILLSLDSHKSVPAPFLTKTYQLVDDPSTDHIVSWGEDDSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEYFKKGEKHLLCEIHRRKTTQPQQTGIMTHHHHHHQHQHHNVPPSFFPFSNTRVSISPPNDYSDEHLNNWSCDSPPLTSPSFINGGPTTTTTTTATNYTTSVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYSSSYLLPHASSNPNAINGGGNVSMMQRPMNQINSTNPKHVTQFQHQTQSHHQHHHGVNVNVNVNVNSPTTTSRSSITMVEGHKSNNYNCSKTKLFGVSLQSKKRVHPECGSNSPTNLETNKTRLVLDQKDDFDFDLGLNLMPPSTC 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03621 393 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa2g03621 393 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 299 IPR027725 -
Vifa2g03621 393 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa2g03621 393 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa2g03621 393 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa2g03621 393 Gene3D - 17 116 IPR036388 -
Vifa2g03621 393 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa2g03621 393 FunFam Heat stress transcription factor B-4 17 115 - -
Vifa2g03621 393 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Vifa2g03621 393 Coils Coil 199 219 - -
Vifa2g03621 393 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03621 Vifa-Chr2 1051217829 1051219125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03621 1 392 HSF AT1G46264 52.068 5.47e-119 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vifa2g03621 HSF_DNA-bind 1.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03621 K09419 - gmx:100780813 494.582