Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03619 ATGTTTGAATTCACGCGTGTTTCATTCTGTATTGTTCAAACACAAAATTCTGAATTGTATGCAAGCATTAGAATGATGAGTTCCTCTATTGTTCAACATGTTTCGGAATGTTTTATCAAACCACTACACCCTATTCCAGAATCAAACCGAACCTGCCATTTGACAACATGGGATATTGCCATGTCGTCTACGAACTACATCCAGAAAGGCCTCCTATTCAAAAAACCAAATAACCAACAAGATTTCATCCATAACCTGTTGGAGAAGCTCAAACACTCTCTTTCTCTTGCTCTATTCCATTTCTACCCTCTATCTGGCCGTCTCGTTACACAAAAATCTCAAGATCCTCCATCTTATTCTATTTTCGTAGATTGCAGCAACAATAACCCCGGAGCTAGGTTCATCTATGCAACTTTGGATATAACCATATCTGATATCCTCTCCCCAATTGATGTTCCACCCGTTGTTAAGTCATTGTTTGATCTGAACAAAGCAATCAATCACGACGGTCACACTTTGCCTTTGTTATCCATCCAAGTCACTGAGCTAGTAGACGGTCTTTTCATAGGTTGTTCCATGAATCACTGTATCGGCGATGGAACTTCTTTTTGGAAGTTCTTTAATACATGGTCCGAAATATTTCAAGCTCAAGGCCATGGTTATGATCATGATGTCCCAATTTCACGCCAACCCTTTCACAATCGTTGGTTTCCAGAAGGTTATGGCCCGCTAATCAATCTTCCATTCAAACATCAGGACGAGTTTGTAAGCAGATTTAAAGCACCTGAGCTGAGAGAGAGAATCTTCCACTTTACGGCAGAGTCTATTGCAAAACTGAAAGCAAAGGCTAATAGGGAATATAATACAAACAAAATCTCTTCGTTCCAATCCCTATCAGCACATGTTTGGAGAAGTATAACCCGTGCACGCCGCCTAACAAATGATCGAAAAACAAGTTGTATGGTGGCTGTAAACAACCGACCGAGAATGAACCCGCCTCTTCCTGAAGAATACTTTGGGACGTCAGTTGATACAGTGAGTGCAGAAGCGACGGTAGGAGAATTACTTGAGAATGATTTGGGATGGGTAGCGTGGAAGGTTCATGTTGCTGTTACAAAGCATGATGAGTTAGAGATTCGAAAGAGTGTGGAAAAGTGGTTAGAGTCTCCTGTTATACTCGACCTTGATCGCCACTATGATCCGTTAAGTGGTGTGGCAATGATAAGTTCGGGTAGGTTCAATATGTATGGGAATGAATTTGGGATGGGGAAAGCAGTGGCTGTTTTGTGTGGTTATGCAAACAAATGTGATGGGAATGTGACTATATATGAGGGACATGAAGGAGGGGGGAGTATGGATTTGGAAATTTCTCTATCTTCAAATGTTATGATAGAGTTGGAATTGGATGACAACTTTATGAATGCAGTTTCTCTGACCAATATGTCAGGTACTTCTAGAGGACACTCTTAA 1470 0.4095 MFEFTRVSFCIVQTQNSELYASIRMMSSSIVQHVSECFIKPLHPIPESNRTCHLTTWDIAMSSTNYIQKGLLFKKPNNQQDFIHNLLEKLKHSLSLALFHFYPLSGRLVTQKSQDPPSYSIFVDCSNNNPGARFIYATLDITISDILSPIDVPPVVKSLFDLNKAINHDGHTLPLLSIQVTELVDGLFIGCSMNHCIGDGTSFWKFFNTWSEIFQAQGHGYDHDVPISRQPFHNRWFPEGYGPLINLPFKHQDEFVSRFKAPELRERIFHFTAESIAKLKAKANREYNTNKISSFQSLSAHVWRSITRARRLTNDRKTSCMVAVNNRPRMNPPLPEEYFGTSVDTVSAEATVGELLENDLGWVAWKVHVAVTKHDELEIRKSVEKWLESPVILDLDRHYDPLSGVAMISSGRFNMYGNEFGMGKAVAVLCGYANKCDGNVTIYEGHEGGGSMDLEISLSSNVMIELELDDNFMNAVSLTNMSGTSRGHS 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03619 489 Pfam Transferase family 34 469 - -
Vifa2g03619 489 Gene3D - 26 244 IPR023213 -
Vifa2g03619 489 Gene3D - 250 468 IPR023213 -
Vifa2g03619 489 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 33 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03619 Vifa-Chr2 1050456673 1050458142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03619 73 467 Monolignol Biosynthesis Gene Families AT5G48930 29.227 2.27e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03619 - - gmx:100775661 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03619 2 1050456673 1050458142 Vifa2g03619 2 1050456673 1050458142 ECH