Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03618 ATGGACTGTAACAATAACCCGTTAAAGCCATCCTCCTCCTCATCATCAGAAAATCAGATTGACATGATGTTGATGATGATGATGCAACTCCCTGAATTCTCTTCATCCAACAACGCTAACAACGATGAGTTTCCACTTCCAGATCAAGACTTCTATACTTCATCAAATCCTAACAATAATACACGTCCTCTTGCAGATTTAATCGATAACCCTCCAAATCCATTCCCTTGGTCATCATCATCTTCATCCTCAACACTACCCTTACAATCAACAAACAATATCTCTTTCACTAATAACAACAACTCCACTACTCCACTAATCTTTCATCATCAACAACAACAACAACAAACTGCACCGTTAATGTTCTCGAATTCGAACACAGACGCTGTCACGAATCCAAACCATTACGGTGCATCTGCATCTGAGAAGAGAACCTCGATGGCGGCGATGAGGGAGATGATATTCCGAATAGCAGCGATGCAACCGATTTACATAGACCCGGAATCAGTAAAACCGCCTAAGAGAAGGAACGTGAAGATCTCAAAAGACCCTCAGAGTATCGCTGCTAGACACAGAAGAGAAAGAATAAGCCAGAAAATAAGAATACTCCAACGAATGGTGCCGGGTGGAACAAAGATGGATACTGCATCAATGTTGGATGAAGCTATTCATTATGTGAAATTTCTCAAGACACAGTTGAAGACATTGCAGGAACACGCCAACACTAACAGGACAGTTGCTGATTCATCGGGGTTAGGGTTCCCTGTTTCATTGCCTAAGCCTTATCAAGCTCGTAACGTTGATCATTATGGTGATTAA 819 0.4164 MDCNNNPLKPSSSSSSENQIDMMLMMMMQLPEFSSSNNANNDEFPLPDQDFYTSSNPNNNTRPLADLIDNPPNPFPWSSSSSSSTLPLQSTNNISFTNNNNSTTPLIFHHQQQQQQTAPLMFSNSNTDAVTNPNHYGASASEKRTSMAAMREMIFRIAAMQPIYIDPESVKPPKRRNVKISKDPQSIAARHRRERISQKIRILQRMVPGGTKMDTASMLDEAIHYVKFLKTQLKTLQEHANTNRTVADSSGLGFPVSLPKPYQARNVDHYGD 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03618 272 FunFam BHLH transcription factor 183 247 - -
Vifa2g03618 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 241 IPR036638 GO:0046983
Vifa2g03618 272 Gene3D - 179 249 IPR036638 GO:0046983
Vifa2g03618 272 MobiDBLite consensus disorder prediction 73 104 - -
Vifa2g03618 272 SMART finulus 186 235 IPR011598 GO:0046983
Vifa2g03618 272 CDD bHLH_AtIND_like 181 239 - -
Vifa2g03618 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 180 229 IPR011598 GO:0046983
Vifa2g03618 272 MobiDBLite consensus disorder prediction 33 104 - -
Vifa2g03618 272 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 12 245 IPR045843 GO:0003700|GO:0006355
Vifa2g03618 272 Pfam Helix-loop-helix DNA-binding domain 187 229 IPR011598 GO:0046983
Vifa2g03618 272 MobiDBLite consensus disorder prediction 33 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03618 Vifa-Chr2 1049494306 1049495124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03618 138 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 76.786 1.75e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa2g03618 HLH 9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03618 - - tpra:123913324 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03618 2 1049494306 1049495124 Vifa2g03618 2 1049494306 1049495124 ECH
Vifa6g03215 6 1065754500 1065755366 Vifa2g03618 2 1049494306 1049495124 PCT