Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03609 ATGAATTTCAAGGGGTTTGGGAATGATCCGGGCGCCTCCGCCGTCGCTGGCGGAGGTGGGAGGACTACGGCGGGGAGTTTTTCTCTGGCGCGGCAGTCGTCGGTGTACTCTTTGACAATTGATGAATTTATGAATAGTATGGGAGGTTCTGGGAAAGATTTTGGATCAATGAATATGGATGAATTGTTGAAGAACATTTGGACTGCAGAAGAGGTTCAAACAATGGGAGGTGAAGAGGCTGTTAGTACTCATTTGCAAAGGCAAGGCTCGTTGACGCTGCCGCGGACGCTTAGTCAGAAAACGGTTGATGAAGTTTGGAAGGATATTTCGAAGGATTATGGTCCTAGTTTGGCTGCACCACAGGCTCAAAGGCAGCCAACTTTGGGGGAAATGACTTTGGAAGAGTTTTTGGTTAGAGCTGGTGTTGTTAGGGAAGATGCGAAACCGAATGATGGAGTTTTTCTCGATCTAGCGCGTGTTGGGAATAATAGTAATTTGGGTTTGGCTTTTCAGGCTCAGCAGATGAATAAAGTTGCTGGTTTTATGGGTAATGGTAGAATGAACGGTAGTACTAATGATGATCCACTTGTTGGTCTTCAGAGTCCTACTAATTTGCCGTTGAATGTGAATGGGATTAGATCAACAAATCAGCAACAGATGCAGAGTTCAGTGTCTCAGCAACAAGTCCAGAATCAACAACTTCAGCAACATCAACTTCAGCAACAGCAGCAGCAGCAGCAACATCAGCAGCAGATATTTCCTAAGCAATCTGTTTTGAACTATGCAACTCAGATGCCTTTGACTAGTAATCAAGCATTGAGAGGAGGAATTATGGGGCTTTCTCCTGATCAAGGCATGAATGCTAATCTTGTGCAAGGTGGAGGGATTGGTATGGTTGGTTTGGCACCTGGGGCTGTTCAAATTGGTGCCGTGTCACCTGCTAACCAAATATCTGGTGATAAACTTGGAAAGTCTAATGGCGATACTTCTTCTGTGTCGCCGGTTCCTTATGTATTTAATGGCGGTATGCGAGGAAGGAAGGGTAATGGAGCTGTGGAGAAGGTAATTGAGAGGAGGCAGAGAAGAATGATAAAGAATAGAGAGTCAGCCGCTAGATCTCGCGCTCGCAAGCAGGCTTATACCATGGAATTGGAAGCAGAAGTTGCAAAATTAAAAGAAGAGAATGAAGAACTTCAGAAAAAGCAGGAAGAAATCATGGAAATTCAGAAAAATCAACTTCCTTCATATAACATGCTAATTGGTCAATCATACGCCAAGAGCAATGGAGAGGATTTGACAAAGGTTAAGGAAATGATGAATTTGCAGCGAGAAGTCAAGAGGAAATGCTTAAGACGAACACAAACCGGTCCATGGTAG 1377 0.4423 MNFKGFGNDPGASAVAGGGGRTTAGSFSLARQSSVYSLTIDEFMNSMGGSGKDFGSMNMDELLKNIWTAEEVQTMGGEEAVSTHLQRQGSLTLPRTLSQKTVDEVWKDISKDYGPSLAAPQAQRQPTLGEMTLEEFLVRAGVVREDAKPNDGVFLDLARVGNNSNLGLAFQAQQMNKVAGFMGNGRMNGSTNDDPLVGLQSPTNLPLNVNGIRSTNQQQMQSSVSQQQVQNQQLQQHQLQQQQQQQQHQQQIFPKQSVLNYATQMPLTSNQALRGGIMGLSPDQGMNANLVQGGGIGMVGLAPGAVQIGAVSPANQISGDKLGKSNGDTSSVSPVPYVFNGGMRGRKGNGAVEKVIERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELQKKQEEIMEIQKNQLPSYNMLIGQSYAKSNGEDLTKVKEMMNLQREVKRKCLRRTQTGPW 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03609 458 Pfam bZIP transcription factor 358 408 IPR004827 GO:0003700|GO:0006355
Vifa2g03609 458 SMART brlzneu 354 419 IPR004827 GO:0003700|GO:0006355
Vifa2g03609 458 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 361 376 IPR004827 GO:0003700|GO:0006355
Vifa2g03609 458 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 29 458 IPR043452 GO:0003700|GO:0045893
Vifa2g03609 458 Coils Coil 374 411 - -
Vifa2g03609 458 Gene3D - 356 412 - -
Vifa2g03609 458 MobiDBLite consensus disorder prediction 1 21 - -
Vifa2g03609 458 SUPERFAMILY Leucine zipper domain 358 406 IPR046347 GO:0003700|GO:0006355
Vifa2g03609 458 CDD bZIP_plant_BZIP46 358 412 - -
Vifa2g03609 458 SUPERFAMILY beta-sandwich domain of Sec23/24 202 269 - -
Vifa2g03609 458 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 5 356 413 - -
Vifa2g03609 458 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 356 407 IPR004827 GO:0003700|GO:0006355
Vifa2g03609 458 Coils Coil 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03609 Vifa-Chr2 1047462422 1047465620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03609 22 458 bZIP Transcription Factor Family AT4G34000 44.262 1.64e-90 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa2g03609 bZIP_1 7.6e-14 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03609 K14432 - gmx:100819313 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03609 2 1047462422 1047465620 Vifa2g03609 2 1047462422 1047465620 ECH