Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03607 ATGGACGATTACACGAGAGAGATGATGGACCTCAAAACCCTCGTGACTCGCACTCTTGAGAAGAAAGGCGTTCTCGCTAGGATCCGAGCTGAATTAAGAGCTAGTGTCTTTGAAGCTATCGAAGAAGAAGATCGTGTCATCGAAAAGGATCAAGCTCTGCCTCCTGCATTGTTAGGTAGCTGTAACGATCGTGCTAAACAGCTTCACGCTTCTCCTTCTGGTAGACTTCTTACTGCACTGGAGAAAGATTTTTGGAAGTCTGAGTTGAAAGAGTTTAGTAGCAAAAATGGATATGATCTTAATAGAAATGGAGACAGTCCCGTGCTCTTGGATGTGCTTGAAGGATTCTTGAAATTTGAGAACTTATCCCAAGCAAGGGCTAGTGGTAGGAGGTTTACTACTTCAGAAACTGAGCCTTTGCCAAACTCAGAATCACGGAACACGCGAAGGCATTCTTCATCATCTGTTGCTGGTGGCTTACCTCCACTAGGAAGGTGCATAGCTATACTCATTAATCCTGATGATCCATATGGTAGCTGCAAGCCAGATTTTATACAAGGATGTGAAGAAGATGAACTGAGTAAAAGAAAGGATCTCTATGACTTTGAGGTTTTGATTAACACTGATTGGCCTTTCTCAGATTCTGTGCTTCAAAGGCCTTTTACTGAAGAACTGTGTAAAGAAGCTTGTATGGGAGATTGCATGTGTTCTGTGGCTATTTTCAGGTTAGGTGATAGTTGTTGGATGAAGAAGTTACCACTCTCAAATGGGAAAGTTAATCCAACACTTAATGGTGCTAAGGCTTTCTTGAAAGTGAGAAAAGATAATACCTCCCTCCAGTCCTTTGATTTTCCTCCATTTCCAATCATTGCGAACAAGAATAATAATAGGGAAACGTTGGTTTTGGTTGTTTCTGTGCTTTTTGGTAGCTCTGCTATTCTCAATGTTGTATTGCTTGTAGCAATATGTTTCAGCACCTCCATGATTGTTCAGTACAAGAAGAAGCTTAGAAGAGTTAGTAGAAGTGAAACTAGTGTTGAAACCAATTTGCGTTGCTTCACTTACGAAGAGCTTGAAGAAGCTACTAATGGATTTGACAAAGAGCTAGGAAGGGGAGCTTTTGGTATAGTTTATGAAGGAGTCGTCAACAACAACACATGTTCCGAAACTCGTGTGGCTGTGAAAAAGTTGAACAATTTTTTGTTGGATCAAGCTCATAGAGAATTCAGGAATGAACTGAATGTCATTGGTCTCACTCATCATAAGAACTTAGTTCGTTTACTTGGATTTTGTGAGGGTGGAAGTGAAAGATTGCTTGTTTATGAGTACATGAGCAATGGCACTTTGGCAAGTTTACTTTTCAATGCTGATGAGAAACAGAAACCAAGTTGGAAACTAAGGCTTGAACTTGCAATAGGAATAGCAAGGGGACTTGTGTATTTACATGAAGAGTGCATTACTAGGATCATCCACTGTGACATAAAGCCTCAAAATATACTTCTTGATGATTACTTCAATGCAAGAATTTCTGACTTTGGACTAGCCAAGTTGATGAACATGAATCAAAGCAAAACCAACACTGGCATTAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTTAAGAACATGCCTATCACAGCTCAAGTGGATGTGTATAGTTATGGAGTAGTGCTACTTGAGATTATTTCATGTAGAAGATGTGTTCAAGAAATGGAACAAGAAGATGAAGAGAAAGCAATATTAGCTGACTGGGCTTATGATTGCTACAAGGATGGTGCTGTAGATGCATTGGTTGAGGGTGACAATGAGGCATTGGACGACAAAGAAAAGTTGGAGAAATTGGTAATGATTGCAATTTGGTGTGTTCAAGAGGATCCAGTTCTTAGACCAAGCATGAGAAATGTGATACATATGCTTGAAGGTACTGTTGAAGTGCAAGTTCCACCATACCCCTCACAAATTAGTATTCAATATTCTCTAATTTAA 1989 0.3982 MDDYTREMMDLKTLVTRTLEKKGVLARIRAELRASVFEAIEEEDRVIEKDQALPPALLGSCNDRAKQLHASPSGRLLTALEKDFWKSELKEFSSKNGYDLNRNGDSPVLLDVLEGFLKFENLSQARASGRRFTTSETEPLPNSESRNTRRHSSSSVAGGLPPLGRCIAILINPDDPYGSCKPDFIQGCEEDELSKRKDLYDFEVLINTDWPFSDSVLQRPFTEELCKEACMGDCMCSVAIFRLGDSCWMKKLPLSNGKVNPTLNGAKAFLKVRKDNTSLQSFDFPPFPIIANKNNNRETLVLVVSVLFGSSAILNVVLLVAICFSTSMIVQYKKKLRRVSRSETSVETNLRCFTYEELEEATNGFDKELGRGAFGIVYEGVVNNNTCSETRVAVKKLNNFLLDQAHREFRNELNVIGLTHHKNLVRLLGFCEGGSERLLVYEYMSNGTLASLLFNADEKQKPSWKLRLELAIGIARGLVYLHEECITRIIHCDIKPQNILLDDYFNARISDFGLAKLMNMNQSKTNTGIRGTKGYVALEWFKNMPITAQVDVYSYGVVLLEIISCRRCVQEMEQEDEEKAILADWAYDCYKDGAVDALVEGDNEALDDKEKLEKLVMIAIWCVQEDPVLRPSMRNVIHMLEGTVEVQVPPYPSQISIQYSLI 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03607 662 SMART serkin_6 363 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03607 662 ProSiteProfiles Protein kinase domain profile. 363 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03607 662 Gene3D Transferase(Phosphotransferase) domain 1 444 648 - -
Vifa2g03607 662 Gene3D Phosphorylase Kinase; domain 1 324 443 - -
Vifa2g03607 662 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 444 648 - -
Vifa2g03607 662 SUPERFAMILY Protein kinase-like (PK-like) 344 653 IPR011009 -
Vifa2g03607 662 CDD STKc_IRAK 369 642 - -
Vifa2g03607 662 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 170 652 - -
Vifa2g03607 662 FunFam S-receptor-like serine/threonine-protein kinase 332 443 - -
Vifa2g03607 662 Pfam Protein tyrosine and serine/threonine kinase 365 640 IPR001245 GO:0004672|GO:0006468
Vifa2g03607 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 489 501 IPR008271 GO:0004672|GO:0006468
Vifa2g03607 662 MobiDBLite consensus disorder prediction 128 157 - -
Vifa2g03607 662 MobiDBLite consensus disorder prediction 128 155 - -
Vifa2g03607 662 ProSitePatterns Protein kinases ATP-binding region signature. 369 396 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03607 Vifa-Chr2 1046799413 1046803002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03607 349 652 Receptor kinase-like Gene Family AT1G60800 38.941 5.38e-70 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa2g03607 PK_Tyr_Ser-Thr 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03607 - - gmx:100776632 738.413