Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03600 ATGGTCGCACTTGCAGCTATAGCAAGAAGCTTCCATTTTCAGAAACATTCTTTAATCAACATCAATACCATCGGTAAACCTTCAGCAGCAGGACTTTACTGGCTCAGGCCTGCTGCTGCAGAAACAGGAGTTGCACCACGTTATAAGCAAGTTTGTGCAGCAGCACAACAGCGACCGACATGGCTCCCTGGACTTGATTCTCCAACTTATCTCGATGGAACTTTGGCTGGAGATTTTGGGTTCGACCCACTTGGACTTGGAGAGGATCCTGAAAGCTTAAAGTGGTATGTGCAAGCAGAATTGGTTCATTCTCGCTTTGCAATGCTTGGTGTCTTGGGAATTCTAGTCACAGATCTACTTCGCGTCGCAGGAGTTAGTACCATACCAATTTGGTTTGAAGCTGGTGCAGTAAAATACGAGATTGCGAACACAGGGACGCTCGTTGCTGTTCAACTACTTTTGATGGGGTATGCTGAAACAAGAAGGTACATGGATTTTGTAAGTCCTGGATCTCAAGCTAAAGAAGGTTCCTTCTTTGGATTGGAAGCTTCACTGGAAGGCTTAGAGCCAGGATATCCTGGGGGTCCTCTGTTTAACCCTCTTGGTCTAGCTAAAGACAGTAAAAATGCTCATGGCTGGAAGCTTAAAGAGATCAAGAATGGGCGACTTGCAATGGTGGCAATACTTGGCATCTTTGTACAAGCTTCAGTGACTCATGTTGGACCAATTGATAACCTTGTGGAGCATCTCTCCAATCCATGGCATAAAACTATTATTCAGACCCTTGCAAGTTCTAGTTCTTAG 804 0.4502 MVALAAIARSFHFQKHSLININTIGKPSAAGLYWLRPAAAETGVAPRYKQVCAAAQQRPTWLPGLDSPTYLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVLGILVTDLLRVAGVSTIPIWFEAGAVKYEIANTGTLVAVQLLLMGYAETRRYMDFVSPGSQAKEGSFFGLEASLEGLEPGYPGGPLFNPLGLAKDSKNAHGWKLKEIKNGRLAMVAILGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQTLASSSS 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03600 267 Pfam Chlorophyll A-B binding protein 68 235 IPR022796 -
Vifa2g03600 267 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 50 262 IPR001344 GO:0009765|GO:0016020
Vifa2g03600 267 FunFam Chlorophyll a-b binding protein, chloroplastic 59 266 - -
Vifa2g03600 267 SUPERFAMILY Chlorophyll a-b binding protein 54 264 - -
Vifa2g03600 267 Gene3D Chlorophyll a/b binding protein domain 60 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03600 Vifa-Chr2 1045542786 1045544144 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03600 50 259 Chloroplast and Mitochondria Gene Families AT3G61470 48.341 1.60e-61 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03600 K08911 - gmx:100804934 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03600 2 1045542786 1045544144 Vifa2g03600 2 1045542786 1045544144 ECH