Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03589 ATGTCTGGTCGGAATGAACGCCAACACCATCACCAACACCAACATCAACACCAACATCAACACCAACATCAACACCATACCGTTCCTCTTGCAGTGCTCTTGAAACGGGAATTGGCAAATGAGAAAGTCGAGAAATCAAATTTGGTTGTTGTGTATAGCCAAGCTAGCGAGAATAAGAAAGGAGAGGATTTCACGTTGATAAAGACCGAACGACAAAGAGTTGTTGCAGATGGGGTTTCTACCTATTCTGTTTTTGGGCTATTTGATGGACACAATGGATCTGCTGCTGCTGTTTATGCCAAGGAGAATCTTCTTAACAACGTTTTAAGTGCCATTCCCCCGGATCTCAACAGAGATGAGTGGGTAGCAGCATTGCCGAGGGCTTTGGTTGCTGGCTTTGTAAAAACTGATAAAGATTTTCAACAAAAAGCAAAAACATCAGGAACAACCGTAACCTTTGTGATTATAGAAGGATGGGTTATAACAGTTGCATCAGTTGGTGATTCCCGTTGCATACTTGAACCTTCTGAAGGTGGGATTCATTACTTGTCGGCAGATCATCGTCTAGACACCAATGAAGAGGAGAGGGCGCGTATCACTTCTAGTGGGGGTGAAGTTGGCCGGCTAAATACAGGTGGAGGTGCGGAGGTTGGCCCGTTGAGATGTTGGCCCGGTGGCCTGTGTCTTTCTCGATCCATTGGTGATATGGATGTTGGTGAATTTATTGTCCCTGTGCCATATGTGAAGCAAGTGAAGATTTCCACTTCTGGAGGAAGACTTATTATCTGCAGTGATGGAGTCTGGGATGCTCTATCTGCAGAAGCGGTCCTTGATTGTTGTCGTGGCATGTCAGCGGAGGCTGCGGCACCACATATTGTAAAGGAATCTTTGCAAGCAAAGGGACTTAGGGATGACACAACATGCATCGTGGTTGATATATTACCCCAGGAGAAGCCACCTACTTCTGCACCATCACAAAAGAGACCGGTAAAAGGAATGTTGAAGGCCATTTTTCGCAAAAAGTCCTCTGAGCCATCTTCATATATTGAAAAAGAATACGTTGAGCCAGATATGGTTCGGGAATTATACGAGGAAGGATCTGCCATGCTTTCAGAAAGGTTTGAAACAAAATATCCACTCTGCAACATGTTCAAGTTATTCATGTGTGCAGTATGTCAAGTAGAGATTAAACCCGGGGAGGGTATTTCAGTACACGAGGGTGCGCCTAACCAAGGGAAACCGCGCCCCTGGGATGGACCTTTCCTATGCTCAAGTTGCCAAGAGAAGAAAGAAGCCATGGAAGGGATACGAACATCAGATAGACATATCAGTGGAAGTGACTAA 1344 0.4524 MSGRNERQHHHQHQHQHQHQHQHQHHTVPLAVLLKRELANEKVEKSNLVVVYSQASENKKGEDFTLIKTERQRVVADGVSTYSVFGLFDGHNGSAAAVYAKENLLNNVLSAIPPDLNRDEWVAALPRALVAGFVKTDKDFQQKAKTSGTTVTFVIIEGWVITVASVGDSRCILEPSEGGIHYLSADHRLDTNEEERARITSSGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDMDVGEFIVPVPYVKQVKISTSGGRLIICSDGVWDALSAEAVLDCCRGMSAEAAAPHIVKESLQAKGLRDDTTCIVVDILPQEKPPTSAPSQKRPVKGMLKAIFRKKSSEPSSYIEKEYVEPDMVRELYEEGSAMLSERFETKYPLCNMFKLFMCAVCQVEIKPGEGISVHEGAPNQGKPRPWDGPFLCSSCQEKKEAMEGIRTSDRHISGSD 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03589 447 SUPERFAMILY PP2C-like 49 313 IPR036457 -
Vifa2g03589 447 FunFam probable protein phosphatase 2C 12 52 319 - -
Vifa2g03589 447 CDD PP2Cc 51 313 IPR001932 -
Vifa2g03589 447 PANTHER PROTEIN PHOSPHATASE 31 312 IPR015655 GO:0004722|GO:0006470
Vifa2g03589 447 MobiDBLite consensus disorder prediction 1 27 - -
Vifa2g03589 447 ProSiteProfiles PPM-type phosphatase domain profile. 48 313 IPR001932 -
Vifa2g03589 447 SMART PP2C_SIG_2 59 313 IPR001932 -
Vifa2g03589 447 Pfam Protein phosphatase 2C 77 300 IPR001932 -
Vifa2g03589 447 SMART PP2C_4 43 311 IPR001932 -
Vifa2g03589 447 MobiDBLite consensus disorder prediction 8 24 - -
Vifa2g03589 447 Gene3D - 39 320 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03589 Vifa-Chr2 1041299688 1041303744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03589 24 447 PP2C-type Phosphatase Gene Family AT1G47380 75.765 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03589 - - tpra:123914399 772.696