Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03587 ATGGTGTCAACATCATATGAAGAGAGTCGCCGGAAAAGAATGGAAGAGAATCGGAAGAGGATGGAGGCTCTCAATCTCACTCAGCTCTCTCAATCCCTTCACAAATCATCTTCTCCCATTTCAAAACCCTCGCCGTCCAAACCTCGCACCCCTCGCACCACCGAGAAACAGCTCGTCGTTGTACGAAGATCCGGCCGTGTCGCCAACCAGCCTGCTCCCCTTTACAAAGAAGTTCTTATTGATCGCGTTATAATACCTAGAAGTAGAACTTCAAGTGGAGGTAGTTATGATAAGTACAGGGATTATTCGAAGCGTGTTTATGCTTCCCATGAAGCTCGAGTGGAAGCATTGGACAAGGCTGAGAAGTTGCAGTCCGAGTTAAACTCGCCGCATCCCATTTTTATTAAGTCAATGCTTCAATCTCATGTCACTGGTGGATTCTGGCTGGGTCTTCCAGTTCATTTCTGCAAGAAAAACCTTCCAAGAAAGGACGAAGTGATGACTTTGATTGATGAGGATGAGAATGAGTCTCCAACTACATATTTGGCTCAAAAAACAGGACTTAGCGCTGGATGGAGAGGTTTTGCTATTGCTCATAAACTTGCTGATGGGGATGCTTTAATTTTTGAATTAGTTAAACGCACTGCATTCAAGGTGTACATTATCAGAGTGAATGGTCCTTCATTCAGAGGGTAA 696 0.4454 MVSTSYEESRRKRMEENRKRMEALNLTQLSQSLHKSSSPISKPSPSKPRTPRTTEKQLVVVRRSGRVANQPAPLYKEVLIDRVIIPRSRTSSGGSYDKYRDYSKRVYASHEARVEALDKAEKLQSELNSPHPIFIKSMLQSHVTGGFWLGLPVHFCKKNLPRKDEVMTLIDEDENESPTTYLAQKTGLSAGWRGFAIAHKLADGDALIFELVKRTAFKVYIIRVNGPSFRG 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03587 231 MobiDBLite consensus disorder prediction 28 56 - -
Vifa2g03587 231 ProSiteProfiles B3 DNA-binding domain profile. 134 225 IPR003340 GO:0003677
Vifa2g03587 231 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 37 225 IPR044837 -
Vifa2g03587 231 SMART B3_2 134 225 IPR003340 GO:0003677
Vifa2g03587 231 Pfam B3 DNA binding domain 134 223 IPR003340 GO:0003677
Vifa2g03587 231 MobiDBLite consensus disorder prediction 28 53 - -
Vifa2g03587 231 CDD B3_DNA 132 223 IPR003340 GO:0003677
Vifa2g03587 231 Gene3D - 109 226 IPR015300 -
Vifa2g03587 231 SUPERFAMILY DNA-binding pseudobarrel domain 127 225 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03587 Vifa-Chr2 1040092632 1040098177 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03587 5 225 B3 DNA Binding Superfamily AT3G19184 56.054 5.45e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa2g03587 B3 8e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03587 - - gmx:100797091 278.1