Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03586 ATGATGGCAAAAATGGTGGCAGATTCATACGAAGATAGCCGTCGCAAAAGAATGGAAGAGAATCGGAAGAGGATGGAGGCTCTCAATCTCCCTCAGCTCTCTCAATCTCTTCACAAATCATCTTCTCCCATTTCGAAACCCTCGCCGTCCAAACCTCGCACCGTCAAGAAAGAGCTCGTCGTTGTTCGAAGATCCGGCCGTGTCGCCAATCTCCCTGCTCCCGTTTACACAGAAGTTCTTATTGATCGCGTTATAATGCCTGGAAATCGAACTTTGAGAGGAGGTTATAATAAGTACAGGGATTATTCAAACCGTGTGTATGCTTCCGATGAAGCTCGAGTGGAAGCGTTGGACAAGGCAGAGAAATTGCAGTCCGAGTTAAACTCGCCGCATCCCATTTTTATTAAGTCAATGCTTCATTCTCATGTCACTGGTGGATTCTGGCTGGGCCTTCCAGTTTATTTCTGCAAGCAAAACCTTCCAGAACAGGAAGAAGTGATGACCTTGATTGATGAGGATGGAGATGAGTATTCAACTACATATTTAGCTTATAAAACAGGACTTAGCGCTGGATGGAGAGGTTTTGCCATTGCTCATAAACTTGCTGACGGGGATGCTTTAATTTTTGAATTAGTTAATCGCACTACATTCAAGGTGTACATTATTAGAGTGAACGGCAGTCCTTCAGAGGGTGAAGAGCTCGAATGA 708 0.4463 MMAKMVADSYEDSRRKRMEENRKRMEALNLPQLSQSLHKSSSPISKPSPSKPRTVKKELVVVRRSGRVANLPAPVYTEVLIDRVIMPGNRTLRGGYNKYRDYSNRVYASDEARVEALDKAEKLQSELNSPHPIFIKSMLHSHVTGGFWLGLPVYFCKQNLPEQEEVMTLIDEDGDEYSTTYLAYKTGLSAGWRGFAIAHKLADGDALIFELVNRTTFKVYIIRVNGSPSEGEELE 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03586 235 ProSiteProfiles B3 DNA-binding domain profile. 134 225 IPR003340 GO:0003677
Vifa2g03586 235 Gene3D - 109 226 IPR015300 -
Vifa2g03586 235 MobiDBLite consensus disorder prediction 1 54 - -
Vifa2g03586 235 MobiDBLite consensus disorder prediction 8 26 - -
Vifa2g03586 235 SUPERFAMILY DNA-binding pseudobarrel domain 127 226 IPR015300 -
Vifa2g03586 235 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 45 225 IPR044837 -
Vifa2g03586 235 MobiDBLite consensus disorder prediction 28 49 - -
Vifa2g03586 235 Pfam B3 DNA binding domain 134 223 IPR003340 GO:0003677
Vifa2g03586 235 CDD B3_DNA 132 223 IPR003340 GO:0003677
Vifa2g03586 235 SMART B3_2 134 225 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03586 Vifa-Chr2 1039970777 1039973456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03586 9 234 B3 DNA Binding Superfamily AT3G19184 53.219 4.33e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa2g03586 B3 2.6e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03586 - - psat:127088162 318.161