Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03562 ATGCAATCAACTAACGGTTCTAATTCGAAACCGACCGAACAGAATACTCAAACTCAACAACGGCCACCCAAAACGCCGCCGCATTCACTTACAGTTCCTCCGCCACATCAACAGTTGGTTCCGATGCAATACCCGGCGGCAATGGTAATGCCGCACCATATGTTACCGCCGCAACATTATGCACTGCCACCGCATCATTATGTGCCTTATCATCACTATCAGCATCACGTGCCGCACGTGCATCAAGGATCTAGTGTTGTTGAGAATAAGACCATCTGGGTTGGTGATTTGCAGCATTGGATGGATGAGAATTATCTTCACCGTTGTTTCGCTTCTAACGGCGAGATTTTCTCAATTAAGGTTATTCGCAATAAGCAGACGGGTCAACCAGAGGGTTATGGATTTGTGGAATTCCATTCACATGTGATCGCAGAGAATATTTTAGTGAATTATGCTGGGATGTTGATGCCTAACACAGACCAACCTTTTCGCCTTAACTGGGCAACATTTAGCACAGGAGATCACAAACGATCAGATAATGTCCCTGATCTTTCTCTTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGCACGTTGCTTGAAGTTTTTTCTAATAAATACCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACCGGCCGCTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGACTAAGGCTTTGAGTGAAATGAATGGTGTTTATTGTTCTAGCAGGCCTATGCGAATTGGTGCTGCAACTCCTAGGAAATCTGGCTATCAACAAGGAAGGCACTCAAATAACACATCCAACCAATCTGAAGCCGATTCTACAAATACAACTATATTTGTTGGAGGACTTGACCCTAGTGCTACTGCTGAAGATCTTAGACAACCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGATGTGGTTTTGTACAATTTGCTAACAGAAATAATGCAGAAGAGGCATTGCAGAAGCTAAATGGTACAACAGTTGGCAAGCAAACTGTTCGCCTTTCTTGGGGCCGCAATCCGGCAAATAAGCAGCTTAGAATGGACTTTGGTAGTCCCTGGAATAGTCCTTATTACGGGGGAGGACCTGTTTACGATGGTTACGGGTATGCTTTGCCTCACCCTCATGACCCGAGCATGTATGCTGCTGCTTACGGAGCTTACCCCATTTATGGAGGAGGACATCAACAGCAAGTAAGCTAA 1263 0.4418 MQSTNGSNSKPTEQNTQTQQRPPKTPPHSLTVPPPHQQLVPMQYPAAMVMPHHMLPPQHYALPPHHYVPYHHYQHHVPHVHQGSSVVENKTIWVGDLQHWMDENYLHRCFASNGEIFSIKVIRNKQTGQPEGYGFVEFHSHVIAENILVNYAGMLMPNTDQPFRLNWATFSTGDHKRSDNVPDLSLFVGDLAADVTDSTLLEVFSNKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERTKALSEMNGVYCSSRPMRIGAATPRKSGYQQGRHSNNTSNQSEADSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTVGKQTVRLSWGRNPANKQLRMDFGSPWNSPYYGGGPVYDGYGYALPHPHDPSMYAAAYGAYPIYGGGHQQQVS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03562 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 170 IPR000504 GO:0003723
Vifa2g03562 420 CDD RRM2_SECp43_like 183 262 - -
Vifa2g03562 420 SUPERFAMILY RNA-binding domain, RBD 66 168 IPR035979 GO:0003676
Vifa2g03562 420 FunFam Polyadenylate-binding protein RBP47 273 391 - -
Vifa2g03562 420 SMART rrm1_1 185 259 IPR000504 GO:0003723
Vifa2g03562 420 SMART rrm1_1 289 356 IPR000504 GO:0003723
Vifa2g03562 420 SMART rrm1_1 91 166 IPR000504 GO:0003723
Vifa2g03562 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 353 IPR000504 GO:0003723
Vifa2g03562 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 255 IPR000504 GO:0003723
Vifa2g03562 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 158 IPR000504 GO:0003723
Vifa2g03562 420 SUPERFAMILY RNA-binding domain, RBD 183 361 IPR035979 GO:0003676
Vifa2g03562 420 MobiDBLite consensus disorder prediction 267 287 - -
Vifa2g03562 420 CDD RRM3_NGR1_NAM8_like 287 358 - -
Vifa2g03562 420 FunFam Polyadenylate-binding protein RBP47B 171 272 - -
Vifa2g03562 420 Gene3D - 183 259 IPR012677 -
Vifa2g03562 420 MobiDBLite consensus disorder prediction 1 38 - -
Vifa2g03562 420 Gene3D - 89 169 IPR012677 -
Vifa2g03562 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 82 364 - -
Vifa2g03562 420 FunFam Polyadenylate-binding protein RBP47B 89 169 - -
Vifa2g03562 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 360 IPR000504 GO:0003723
Vifa2g03562 420 MobiDBLite consensus disorder prediction 1 25 - -
Vifa2g03562 420 Gene3D - 265 367 IPR012677 -
Vifa2g03562 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 263 IPR000504 GO:0003723
Vifa2g03562 420 MobiDBLite consensus disorder prediction 260 287 - -
Vifa2g03562 420 CDD RRM1_SECp43_like 91 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03562 Vifa-Chr2 1037589032 1037592177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03562 61 368 Eukaryotic Initiation Factors Gene Family AT4G34110 28.750 1.34e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03562 - - gmx:100785454 617.461