Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03552 ATGAATTTGAATATGAATATGAATATGAATTTTGAAGCAATGAATAGAAGCTCTTCAACAACAACTTCTTCATCGGATTCTTGTTCATCGGAATCGAATCTGATGAATCGGAGCAAAGTAGATAGGATCAAAGGTCCATGGAGTGCTGAAGAAGATAGAATTCTAACGCGGCTGGTTGAACAACACGGAGCGAGAAACTGGTCACTCATTAGCCGGTATATTAAAGGGAGGTCCGGTAAGTCTTGTAGACTCCGGTGGTGTAATCAGCTGAGTCCAACGGTGGAGCACCGTCCATTCTCGTCGCAAGAGGATGAAACTATTATAGCGGCGCATGGTCAATACGGTAACCGCTGGGCAACCATTGCGCGTCTTTTACCTGGTAGAACTGATAATGCTGTGAAGAATCATTGGAACTCGACGCTTAAGAGAAGAGCAAGCGGTCGCGGCGGTGGTAGTGGTGGTGATGGTGGTGGTGATTCTGTTACGGTTGCCGGTGGTTTCAATGGTGGCAACGAAAGGGGAAATAATTGTTCTGGTCTGTTTGCTCGATCTTGTTTTGCGGTGGAGGATGATCCGTTGACTGCGTTGACTCTTGCTCCTCCGGGGAATTTTCATGGCGGTGCTGTGGAAGATAAGGAGGAGGTGGTTGCGGATCATCAACCGTCAGCGTCGCCGGAGAATGTTCCGTCGGCGTTCTGGGATGTGATGAGAGGTGTGATTGCAAAGGAAGTTAGGGAATATGTTTCTTCTAATTTTTCTCATAACTCTGGTTTTCAATAA 780 0.4667 MNLNMNMNMNFEAMNRSSSTTTSSSDSCSSESNLMNRSKVDRIKGPWSAEEDRILTRLVEQHGARNWSLISRYIKGRSGKSCRLRWCNQLSPTVEHRPFSSQEDETIIAAHGQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRASGRGGGSGGDGGGDSVTVAGGFNGGNERGNNCSGLFARSCFAVEDDPLTALTLAPPGNFHGGAVEDKEEVVADHQPSASPENVPSAFWDVMRGVIAKEVREYVSSNFSHNSGFQ 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03552 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 145 IPR017930 -
Vifa2g03552 259 CDD SANT 98 141 IPR001005 -
Vifa2g03552 259 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Vifa2g03552 259 ProSiteProfiles Myb-like domain profile. 39 90 IPR001005 -
Vifa2g03552 259 Pfam Myb-like DNA-binding domain 47 105 - -
Vifa2g03552 259 FunFam MYB transcription factor 44 95 - -
Vifa2g03552 259 Gene3D - 98 144 - -
Vifa2g03552 259 CDD SANT 46 88 IPR001005 -
Vifa2g03552 259 PANTHER MYB PROTEIN-RELATED 44 218 - -
Vifa2g03552 259 SMART sant 95 143 IPR001005 -
Vifa2g03552 259 SMART sant 43 92 IPR001005 -
Vifa2g03552 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 94 IPR017930 -
Vifa2g03552 259 Gene3D - 43 95 - -
Vifa2g03552 259 SUPERFAMILY Homeodomain-like 41 137 IPR009057 -
Vifa2g03552 259 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03552 Vifa-Chr2 1032833755 1032834534 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03552 37 159 MYB Transcription Factor Family AT4G37260 70.400 1.16e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa2g03552 Myb_DNA-bind_6 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03552 - - gmx:778051 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03552 2 1032833755 1032834534 Vifa2g03552 2 1032833755 1032834534 ECH