Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03549 ATGACTACTCCTTCTAGTTCTAACAAACCTTCTTCTCCGAATCGAGGGAAGGGAAAGGGTGTACAATCAATTCAGCAAAGGAGGTTGACGAGACAGAAGAGGCTCTGTTACCCTACCGATCTAGACGGGGAACCGTTTGAAGGTGTTTCGTTTTCTTTGCCGGCGTCGCCTCTCAGGTCTAGTGGAGATCATCGCTCGTGTTCCGCTGTTCCCTTGCCGCTTCCGTCGCCGTTCACTCGACGGACGGATCATCATGCCAGAAAAACGGTGGATCATGAAGCTGCGAGAACTTCAAGGTCTTCAAGTAATTTAGGTAGATCCTTTTTTGCTACACTCACTGGAAATGGAAAGAATGATTTAAGAGTGAATATTCCTCCTGTTAGAAGCTTGGTGACAAGCAACAGCTCTTGTAAAGATACTAGAAAACACTCTCATGACAATGAGTGTGAAGGTGTTACCAACGGGAAGTTGCAATTTGCTGCTAGGAGTGCCCCGACAAGCATATTCTCCAGTCCTGTAACTAGTCCGCGCAGATTAAGCAATGTTGATTTATTTGATCCTTCCATCAATTTTCCTCAAGATTTTAACGACATTTTGAGGCTGCCTGCTAAAATTTCTCATAGTCCAGACTTGTCTCCTCGTCGTAGCTTTGGGAACCACAGTCCTAAACACCACCACACTATTCAAGGAGGATCTCATTCTCAACAATCTAAATTTTTCTCTAGGGTGTGGCCGGAAAATAACCATGCTGATGCACATCCATTGCCTCTTCCACCGAGAGCTTCTCCACAGCCACAACAATCATCACCTTCACATTCACAACATCAATCAAGTGCCACAATGCATCACTCAACAGAAAATTTCCATTCAATGAAGGGTCAATGGCAGAAAGGAAAACTAATTGGACGAGGATCATTTGGAAGTGTTTATCATGCAACAAACCTAGAGACTGGAGCCTCATGTGCCTTGAAAGAGGTAGATCTGTTTCCCGATGATCCTAAATCTGCTGACTGTATAAAGCAACTCGACCAGGAAATCAGGATTCTTGGTCAGCTAAACCACCCCAACATTGTACAGTATTATGGCAGTGAGGAAGTTGGTGATCGATTGTGCTTATATATGGAATTTGTCCATCCTGGATCACTTCAGAAGTTTATGCAAGAACATTGTGGGGCTCTGACAGAATCTGTGGTTCGAAATTTTACGAGGCATATTCTCTCTGGATTGGAGTACCTACACAGTAACAACACTATCCACAGGGACATTAAAGGTGCAAACTTGCTAGTTGATGCATCAGGCATTGTCAAGCTTGCAGATTTTGGGGTGTCAAAAATTTTGACAGAGAAATCATATGAACTTTCACTGAAAGGAAGTCCCTACTGGATGGCTCCAGAGCTCATGATGGCTACCATGAAGAAAGAAAGCAATCCCAACATCGCCATGGCTGTTGATATATGGAGCTTAGGATGCACCATCATCGAAATGCTGACAAGCAAACCCCCTTGGAGCGAGTTTTCAGGGCACCAAGCCATGTTCAAGGTACTGCACAGATCCCCGGACATACCCGAGTCTTTATCTCCAGAAGGCCGGGATTTCCTTGAGCAGTGTTTCCGAAGGAATCCTGCAGATCGACCATCCGCAGCAGTGCTTCTAACACATGCCTTTGTACAAAATTTGCATGATCACGATGTTATAGTTCATTCACTAGGTTGTCCTAAAGAACACACCACAGTTCATTCACAAGGATTTCAAAAAGAAGAAGATTCTGGACCCAAAGATGAATCCCGTAAACATAGTCCAGGACACAGTTCAAAAAGTAGCCGAGGTGTAGTGCCAGCCTCCTTTCGTGCACGGATTTTTTACAAAATTCAAAGTTTAATCGGTGACACTTCCAAAAAAGCCGATATCGAGGAATCTAATCACATTAGATCTTCTCCTGTATCTCCTTTGCGGTCAGGAACTAACAGTCCTCAATCTCCCTTTAAATCTAGTACTCGCAATTGCATGACTGTTACCAAATCCTCCAACATACCCTTCACTGTTATGAGATTCGTGAAGCACCTGTGA 2067 0.4407 MTTPSSSNKPSSPNRGKGKGVQSIQQRRLTRQKRLCYPTDLDGEPFEGVSFSLPASPLRSSGDHRSCSAVPLPLPSPFTRRTDHHARKTVDHEAARTSRSSSNLGRSFFATLTGNGKNDLRVNIPPVRSLVTSNSSCKDTRKHSHDNECEGVTNGKLQFAARSAPTSIFSSPVTSPRRLSNVDLFDPSINFPQDFNDILRLPAKISHSPDLSPRRSFGNHSPKHHHTIQGGSHSQQSKFFSRVWPENNHADAHPLPLPPRASPQPQQSSPSHSQHQSSATMHHSTENFHSMKGQWQKGKLIGRGSFGSVYHATNLETGASCALKEVDLFPDDPKSADCIKQLDQEIRILGQLNHPNIVQYYGSEEVGDRLCLYMEFVHPGSLQKFMQEHCGALTESVVRNFTRHILSGLEYLHSNNTIHRDIKGANLLVDASGIVKLADFGVSKILTEKSYELSLKGSPYWMAPELMMATMKKESNPNIAMAVDIWSLGCTIIEMLTSKPPWSEFSGHQAMFKVLHRSPDIPESLSPEGRDFLEQCFRRNPADRPSAAVLLTHAFVQNLHDHDVIVHSLGCPKEHTTVHSQGFQKEEDSGPKDESRKHSPGHSSKSSRGVVPASFRARIFYKIQSLIGDTSKKADIEESNHIRSSPVSPLRSGTNSPQSPFKSSTRNCMTVTKSSNIPFTVMRFVKHL 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03549 688 MobiDBLite consensus disorder prediction 266 283 - -
Vifa2g03549 688 SMART serkin_6 295 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03549 688 Gene3D Transferase(Phosphotransferase) domain 1 285 607 - -
Vifa2g03549 688 MobiDBLite consensus disorder prediction 206 283 - -
Vifa2g03549 688 SUPERFAMILY Protein kinase-like (PK-like) 269 569 IPR011009 -
Vifa2g03549 688 MobiDBLite consensus disorder prediction 1 86 - -
Vifa2g03549 688 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 70 577 - -
Vifa2g03549 688 FunFam Predicted protein 291 580 - -
Vifa2g03549 688 MobiDBLite consensus disorder prediction 641 666 - -
Vifa2g03549 688 MobiDBLite consensus disorder prediction 576 609 - -
Vifa2g03549 688 MobiDBLite consensus disorder prediction 637 666 - -
Vifa2g03549 688 ProSiteProfiles Protein kinase domain profile. 295 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03549 688 Pfam Protein kinase domain 296 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03549 688 MobiDBLite consensus disorder prediction 1 32 - -
Vifa2g03549 688 MobiDBLite consensus disorder prediction 223 243 - -
Vifa2g03549 688 MobiDBLite consensus disorder prediction 579 601 - -
Vifa2g03549 688 ProSitePatterns Protein kinases ATP-binding region signature. 301 324 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03549 Vifa-Chr2 1032502020 1032506678 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03549 251 558 MAP Kinase Kinase Kinase AT5G66850 66.234 4.26e-145 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vifa2g03549 Pkinase 4.2e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03549 - - gmx:100781764 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03549 2 1032502020 1032506678 Vifa2g03549 2 1032502020 1032506678 ECH