LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g03545	ATGGCTATCCGTGTAACCTTCTCCTTCTCAGGCTATGTCGCCCAAAATCTAGTTTCCTCCGCCGGCGTTCGAGTCGCCAATTCTCGTTGTGTCCAAGAATGCTGCATCCTCTCTAAATTCTTTGGAACCAACCAGAAACGCGATCTCGAACGTTCCGGCGGCTTTCGCAGTCTCTATTCCGATCTCAGGAGACCTAAAAATTCTGCCTATTCCACCCTCGCCGGAGAGTTTCTCTCCGAAGGCTGTACGAATCCGATCGTGTTAGGTTTGATTTCGATGATGAAGTCAACGAGTGTTGTGTCCGGGTCAACTTCGGCGGCTATGGGTATTATGGGTATTGCACCATTCAAAACCTCTTCGATTATACCCTTTTTGCAGGGTTCCAAGTGGCTTCCTTGTAACGAGTCTGTTCCTGGTGCTGATGCTACAACGTGGGAGGTTGATAAAGGTGGAACGGAGTGTGTTACTGTTTCTGCCACAAAATCGCGTTTGAGTCAAAAGGAAACTACTAGTGGTTGGATTTCGAAATTGTTGAATGTGTGTTCGGAAGATGCTAAAGCTGTGTTCACCGCTGTTACTGTTAGTTTTCTGTTTAAATCGTTCTTGGCTGAACCGAAATCTATTCCTTCTGCATCTATGTATCCAACTCTTGAAGTTGGTGATCGTGTTTTAACAGAAAAGTTTTCTTTCTTCTTTAGAAAGCCAGATGTTTCTGATATTGTGATTTTCAAAGCACCTCCTTGTTTGAAGAAATATGGTTTTAGTTCATCTGATGTTTTTATTAAAAGGGTTGTGGCTAAGGCTGGTGATGTTGTGGAAGTTCGTGGTGGGAAACTACTAGTGAATGGTGTTGCTGAAGAAGAGGAATTTGTATTAGAACCTCTTGCGTATGAGTTGGCTCCAATGGTTGTGCCAGAAGGACATGTGTTTGTGATGGGGGACAATCGTAACAAGAGTTTTGATTCTCATAACTGGGGTCCACTCCCGATCGAGAACATTGTTGGTAGGTCCATGTTTCGCTACTGGCCTCCATCCAAAGTTGCGGACACTGTCTCTGTTCATAACTCCCCACCCGGAAATAAATCTGTGGCAGTTTCTTGA	1101	0.446	MAIRVTFSFSGYVAQNLVSSAGVRVANSRCVQECCILSKFFGTNQKRDLERSGGFRSLYSDLRRPKNSAYSTLAGEFLSEGCTNPIVLGLISMMKSTSVVSGSTSAAMGIMGIAPFKTSSIIPFLQGSKWLPCNESVPGADATTWEVDKGGTECVTVSATKSRLSQKETTSGWISKLLNVCSEDAKAVFTAVTVSFLFKSFLAEPKSIPSASMYPTLEVGDRVLTEKFSFFFRKPDVSDIVIFKAPPCLKKYGFSSSDVFIKRVVAKAGDVVEVRGGKLLVNGVAEEEEFVLEPLAYELAPMVVPEGHVFVMGDNRNKSFDSHNWGPLPIENIVGRSMFRYWPPSKVADTVSVHNSPPGNKSVAVS	366

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vifa2g03545	366	PANTHER	SIGNAL PEPTIDASE I	171	348	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
Vifa2g03545	366	Coils	Coil	363	366	-	-
Vifa2g03545	366	CDD	S26_SPase_I	204	336	IPR019533	GO:0004252\|GO:0006465
Vifa2g03545	366	NCBIfam	signal peptidase I	187	343	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
Vifa2g03545	366	Gene3D	Umud Fragment, subunit A	198	355	-	-
Vifa2g03545	366	ProSitePatterns	Signal peptidases I signature 3.	309	322	IPR019758	GO:0004252\|GO:0016020
Vifa2g03545	366	ProSitePatterns	Signal peptidases I serine active site.	210	217	IPR019756	GO:0004252\|GO:0016020
Vifa2g03545	366	SUPERFAMILY	LexA/Signal peptidase	200	347	IPR036286	-
Vifa2g03545	366	FunFam	Peptidase/ serine-type peptidase	210	341	-	-
Vifa2g03545	366	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	201	217	IPR000223	GO:0006508\|GO:0008236\|GO:0016020

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g03545	Vifa-Chr2	1030481632	1030483355	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g03545	213	343	MADS-box Gene Family	AT1G29960	34.586	2.86e-13	64.3

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g03545	K03100		-	gmx:100817525	518.079

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa2g03545	2	1030481632	1030483355	Vifa2g03545	2	1030481632	1030483355	ECH

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