Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03545 ATGGCTATCCGTGTAACCTTCTCCTTCTCAGGCTATGTCGCCCAAAATCTAGTTTCCTCCGCCGGCGTTCGAGTCGCCAATTCTCGTTGTGTCCAAGAATGCTGCATCCTCTCTAAATTCTTTGGAACCAACCAGAAACGCGATCTCGAACGTTCCGGCGGCTTTCGCAGTCTCTATTCCGATCTCAGGAGACCTAAAAATTCTGCCTATTCCACCCTCGCCGGAGAGTTTCTCTCCGAAGGCTGTACGAATCCGATCGTGTTAGGTTTGATTTCGATGATGAAGTCAACGAGTGTTGTGTCCGGGTCAACTTCGGCGGCTATGGGTATTATGGGTATTGCACCATTCAAAACCTCTTCGATTATACCCTTTTTGCAGGGTTCCAAGTGGCTTCCTTGTAACGAGTCTGTTCCTGGTGCTGATGCTACAACGTGGGAGGTTGATAAAGGTGGAACGGAGTGTGTTACTGTTTCTGCCACAAAATCGCGTTTGAGTCAAAAGGAAACTACTAGTGGTTGGATTTCGAAATTGTTGAATGTGTGTTCGGAAGATGCTAAAGCTGTGTTCACCGCTGTTACTGTTAGTTTTCTGTTTAAATCGTTCTTGGCTGAACCGAAATCTATTCCTTCTGCATCTATGTATCCAACTCTTGAAGTTGGTGATCGTGTTTTAACAGAAAAGTTTTCTTTCTTCTTTAGAAAGCCAGATGTTTCTGATATTGTGATTTTCAAAGCACCTCCTTGTTTGAAGAAATATGGTTTTAGTTCATCTGATGTTTTTATTAAAAGGGTTGTGGCTAAGGCTGGTGATGTTGTGGAAGTTCGTGGTGGGAAACTACTAGTGAATGGTGTTGCTGAAGAAGAGGAATTTGTATTAGAACCTCTTGCGTATGAGTTGGCTCCAATGGTTGTGCCAGAAGGACATGTGTTTGTGATGGGGGACAATCGTAACAAGAGTTTTGATTCTCATAACTGGGGTCCACTCCCGATCGAGAACATTGTTGGTAGGTCCATGTTTCGCTACTGGCCTCCATCCAAAGTTGCGGACACTGTCTCTGTTCATAACTCCCCACCCGGAAATAAATCTGTGGCAGTTTCTTGA 1101 0.446 MAIRVTFSFSGYVAQNLVSSAGVRVANSRCVQECCILSKFFGTNQKRDLERSGGFRSLYSDLRRPKNSAYSTLAGEFLSEGCTNPIVLGLISMMKSTSVVSGSTSAAMGIMGIAPFKTSSIIPFLQGSKWLPCNESVPGADATTWEVDKGGTECVTVSATKSRLSQKETTSGWISKLLNVCSEDAKAVFTAVTVSFLFKSFLAEPKSIPSASMYPTLEVGDRVLTEKFSFFFRKPDVSDIVIFKAPPCLKKYGFSSSDVFIKRVVAKAGDVVEVRGGKLLVNGVAEEEEFVLEPLAYELAPMVVPEGHVFVMGDNRNKSFDSHNWGPLPIENIVGRSMFRYWPPSKVADTVSVHNSPPGNKSVAVS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03545 366 PANTHER SIGNAL PEPTIDASE I 171 348 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vifa2g03545 366 Coils Coil 363 366 - -
Vifa2g03545 366 CDD S26_SPase_I 204 336 IPR019533 GO:0004252|GO:0006465
Vifa2g03545 366 NCBIfam signal peptidase I 187 343 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vifa2g03545 366 Gene3D Umud Fragment, subunit A 198 355 - -
Vifa2g03545 366 ProSitePatterns Signal peptidases I signature 3. 309 322 IPR019758 GO:0004252|GO:0016020
Vifa2g03545 366 ProSitePatterns Signal peptidases I serine active site. 210 217 IPR019756 GO:0004252|GO:0016020
Vifa2g03545 366 SUPERFAMILY LexA/Signal peptidase 200 347 IPR036286 -
Vifa2g03545 366 FunFam Peptidase/ serine-type peptidase 210 341 - -
Vifa2g03545 366 PRINTS Bacterial leader peptidase 1 (S26A) family signature 201 217 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vifa2g03545 366 PRINTS Bacterial leader peptidase 1 (S26A) family signature 260 272 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vifa2g03545 366 PRINTS Bacterial leader peptidase 1 (S26A) family signature 304 323 IPR000223 GO:0006508|GO:0008236|GO:0016020
Vifa2g03545 366 Pfam Signal peptidase, peptidase S26 185 342 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03545 Vifa-Chr2 1030481632 1030483355 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03545 213 343 MADS-box Gene Family AT1G29960 34.586 2.86e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03545 K03100 - gmx:100817525 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03545 2 1030481632 1030483355 Vifa2g03545 2 1030481632 1030483355 ECH