Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03544 ATGCAAGCCTCCGGCTGCTTTATCTTGTTCTTATTCTTTCTCTTTTCTTCGAGATCATTTCTCTCGCACGCAATTTCCAATGAAGAAGCATTTTCAATCGCCCGTCGTCAACTGTTACACATAGAAGAAAACGACGATTTACCTGACAATTACGCAGAAACCGTTAAAACAGAATTCACTTTTCCTAATCCCAATCTTAAACGCGCTTATGTAGCGCTTCAAGCATGGAAGAAAGCGATTTATTCTGATCCAACCGGCGTGACCAAGAACTGGGTAGGTGCTGATGTTTGTTCTTACAAGGGAGTTTTCTGTGCACCTTCTGTTAATGATCCGAAAATCGAAGTTGTAGCTGGGATTGATCTTAATCATGCAGACATTGCAGGCTACATTCCTCCTGAGATTGGTTTGTTAACAGATCTTGCTCTCTTTCACATTAACACAAACAGGTTCTGTGGGATTATTCCAAAAAGTTTTTCTAAGTTAGTACTTTTGCATGAGGTTGATATTAGTAACAACCGTTTTGTTGGAGAATTTCCTCAACCTCTTCTTCCGCTTCCGGATGTAAAATTTATTGATATTAGGTTCAATAATTTTGAAGGAGAAATTCCGGGCGAGCTTTTTAATAAAAAACTCGACGCGATATTCTTAAACGACAATAGATTTACACATACAATTCCAGAGAATCTGGGAAGTTCTCCGGCATCGGTTGTTGTTATTGCCAATAATGAGATCACTGGTTGTATTCCTTCAAGCATCGGTGAGATGAAAACTACATTGGATGAGTTTGTTGCAACTAACAACAACCTTACCGGTTGTTTACCGTCTGAAGTGGGAAATCTTGAAACAGCATACATTTTTGATGTGAGTGAAAATGTGTTGGTTGGTGTGTTGCCAAGGACTTTGAAGGGAATGCAGAAAGTGGAAATCTTGGCTATTGCAGATAATAAACTAACCGGTTTTGTTCCGAGGAGTGTGTGTACTTTGCCTAGTTTGGCAAACTTTACATTCTCTAATAATTATTTTAATGGTGAAGAAGAAGGTTGTGTGCCTCCAGGAAAAGAGGTTTTGTTGGAGGATGAGGATAATTGTATACCTGGTAGGCCTAAACAGAAGGAAGCAAATGATTGTAATGTGGTTACCAGTAAGCCTGTTGATTGTAGCAAGGCACAATGTGGTCATGGTAGTGGTAATGGTGATGGAAATGATCAAAAGGAAACACCTTCTGAGAACCCATCACCTTCAGTTCCAAAGCCAGAGCCACAACCTACACCATCTCCTTCAAAGCCTTCACCCTCACCTTCTACACCAAGCGAGACTCCAACACCAATTCCACAACCCAAACCAACTCCAACTCCATCACCACCGAGTGAGAAGCCGGAACCCAAACCAACTCCCGAAAAGCCGGAACCTAAACCAACCCCAACTCCGTCTAAATCAACCCCAACTCCCGAGCCCAAGCCAACCCCTACCCCATCTAAAGACAAGCCGGAACCAGAACCCACACCAACCCCTCATACACCCAAAGCAGAACCACCACCTGAAGAGGATCCTCACAATGAAGCACCCAAAACAAGAACAAGATCCCCACCGCCAGTTCAATCTCCACCACCTCCAGTTCATTCACCTCCTCCACCCGTTCATTCACCTCCTCCACCGGTTCACTCTCCACCACCTCCAGTTCATTCACCACCACCTCCCGTCAAATCACCTCCTCCACCCGTTCACTCTCCACCACCTCCAGTTCATTCACCACCACCTCCCGTTCACTCTCCACCACCGCCAGTCCACTCCCCACCTCCACCAGTACATTCTCCTCCTCCTCCTGTCCACTCCCCACCTCCACCAGTACATTCTCCTCCTCCTCCTGTCCACTCTCCACCACCTCCAGTTCACTCCCCACCTCCACCATCACCTCCTCCTCCTGTTCAAGCACCACCTCCAGAATACGAAGATGTCATTCTCCCACCTGACTTTGGTTCTTCCTATGCTTCACCACCTCCACCAATCATTGCTGGATACTAA 2022 0.4535 MQASGCFILFLFFLFSSRSFLSHAISNEEAFSIARRQLLHIEENDDLPDNYAETVKTEFTFPNPNLKRAYVALQAWKKAIYSDPTGVTKNWVGADVCSYKGVFCAPSVNDPKIEVVAGIDLNHADIAGYIPPEIGLLTDLALFHINTNRFCGIIPKSFSKLVLLHEVDISNNRFVGEFPQPLLPLPDVKFIDIRFNNFEGEIPGELFNKKLDAIFLNDNRFTHTIPENLGSSPASVVVIANNEITGCIPSSIGEMKTTLDEFVATNNNLTGCLPSEVGNLETAYIFDVSENVLVGVLPRTLKGMQKVEILAIADNKLTGFVPRSVCTLPSLANFTFSNNYFNGEEEGCVPPGKEVLLEDEDNCIPGRPKQKEANDCNVVTSKPVDCSKAQCGHGSGNGDGNDQKETPSENPSPSVPKPEPQPTPSPSKPSPSPSTPSETPTPIPQPKPTPTPSPPSEKPEPKPTPEKPEPKPTPTPSKSTPTPEPKPTPTPSKDKPEPEPTPTPHTPKAEPPPEEDPHNEAPKTRTRSPPPVQSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVKSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPSPPPPVQAPPPEYEDVILPPDFGSSYASPPPPIIAGY 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03544 673 PRINTS Proline rich extensin signature 422 443 - -
Vifa2g03544 673 PRINTS Proline rich extensin signature 462 479 - -
Vifa2g03544 673 PRINTS Proline rich extensin signature 404 416 - -
Vifa2g03544 673 PRINTS Proline rich extensin signature 444 460 - -
Vifa2g03544 673 MobiDBLite consensus disorder prediction 411 459 - -
Vifa2g03544 673 Pfam Leucine rich repeat N-terminal domain 71 104 IPR013210 -
Vifa2g03544 673 MobiDBLite consensus disorder prediction 468 489 - -
Vifa2g03544 673 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 10 537 - -
Vifa2g03544 673 Gene3D Ribonuclease Inhibitor 68 353 IPR032675 -
Vifa2g03544 673 MobiDBLite consensus disorder prediction 384 673 - -
Vifa2g03544 673 FunFam Leucine-rich repeat extensin-like protein 1 70 231 - -
Vifa2g03544 673 MobiDBLite consensus disorder prediction 509 523 - -
Vifa2g03544 673 MobiDBLite consensus disorder prediction 528 652 - -
Vifa2g03544 673 MobiDBLite consensus disorder prediction 394 410 - -
Vifa2g03544 673 SUPERFAMILY L domain-like 70 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03544 Vifa-Chr2 1030196836 1030199199 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03544 24 527 Trihelix Transcription Factor Family AT4G33970 51.976 1.94e-170 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03544 - - gmx:100780677 589.341