Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03537 ATGGCACCCAGTTTTGATTGTGCTTCTAGCCTTCTTTGCACTGAGGATACCAGTGTTTTCGATGATGGTGAGAATCAGGGTACTGTTGAGGTGTACGAGGATTCGTGGCGTCCGAGGTTCGATCATCGGAGGGGTGGAGATGACTCTGGTGGCGTTGCTGATGAGTTGCCATTACAGAGTGAGGAGTGTTTTGGCCTGATGTTGGAAAAGGAATGTCAACAATGGGTTGGTGAGGATTACTTTAATAGGTTTCACTTTGGGGATTTGGATTTTGGTGCTAGAAATGAAGCGATTGATTGGATTCTTAAGGTTGGTGCCCATTTCGGTTTCGGTCCTTTATGCGTTTATCTATCCATTAATTACATGGATCGGTTCCTTTCTGCATATGAATTACCAAAAGGTCGAGTTTGGACAATGCAATTGTTGGCTATAGCTTGTTTGTCTTTGGCAGCCAAATTAGAGGAAACTGATGTTCCTATGATTCTTGATTTGCAGATTGGTGAATCTAAGTTTCTATTTGAAGCGAAAACTATTCAGAGAATGGAACTTCTTGTACTAAGCACATTGAAGTGGAGAATGCAATCAATTACTCCTTTCTCATTCATCGAATATTTCCTTACTAAGATTAATGATAGTAATAAGAGTTCATTAAGTTCTTCCATTTCACAATCCACTAAACTCATATCAAACACCGTTAAAGGAATTGAATTCTTGGAATTCAAACCATCAGAGATTGCAGCAGCAGTGGCTACATATGTTGTAGGGGAAACCCAAGCAATTGATGCTAGCAAATCAATTTCGACTCTGATTCGATACATGGAAAAGGAGAGATTAATGAAGTGTATTGAAAAGGTGATGTCATTGAACAGTATTGTAACTGGCAAGAATTCAAGTGCATCTGTCCCTAGTGTGCCACAAAGTCCAATAGGTGTGTTGGAAACCACATTGTGCTTCAGCTACAAGAGTGATGACACAACCAATGGTGGTGATGGTCCATGTTCTTCTTCCCATAATAGTAGTCCAGATGCTAAGAGGAGGAAGCTAAACAAAAGCTGTGGATCAGAGCTTTTGTAG 1074 0.405 MAPSFDCASSLLCTEDTSVFDDGENQGTVEVYEDSWRPRFDHRRGGDDSGGVADELPLQSEECFGLMLEKECQQWVGEDYFNRFHFGDLDFGARNEAIDWILKVGAHFGFGPLCVYLSINYMDRFLSAYELPKGRVWTMQLLAIACLSLAAKLEETDVPMILDLQIGESKFLFEAKTIQRMELLVLSTLKWRMQSITPFSFIEYFLTKINDSNKSSLSSSISQSTKLISNTVKGIEFLEFKPSEIAAAVATYVVGETQAIDASKSISTLIRYMEKERLMKCIEKVMSLNSIVTGKNSSASVPSVPQSPIGVLETTLCFSYKSDDTTNGGDGPCSSSHNSSPDAKRRKLNKSCGSELL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03537 357 CDD CYCLIN_AtCycD-like_rpt1 93 191 - -
Vifa2g03537 357 Gene3D - 67 284 - -
Vifa2g03537 357 MobiDBLite consensus disorder prediction 340 357 - -
Vifa2g03537 357 FunFam D6-type cyclin 190 283 - -
Vifa2g03537 357 MobiDBLite consensus disorder prediction 325 357 - -
Vifa2g03537 357 ProSitePatterns Cyclins signature. 94 125 IPR006671 -
Vifa2g03537 357 PANTHER CYCLINS 60 287 IPR039361 -
Vifa2g03537 357 SUPERFAMILY Cyclin-like 59 193 IPR036915 -
Vifa2g03537 357 Gene3D - 77 194 - -
Vifa2g03537 357 CDD CYCLIN_AtCycD-like_rpt2 196 285 - -
Vifa2g03537 357 MobiDBLite consensus disorder prediction 325 339 - -
Vifa2g03537 357 SMART Cyclin_C_2 196 320 IPR004367 -
Vifa2g03537 357 SUPERFAMILY Cyclin-like 178 290 IPR036915 -
Vifa2g03537 357 FunFam D2/4-type cyclin 77 189 - -
Vifa2g03537 357 Pfam Cyclin, C-terminal domain 196 289 IPR004367 -
Vifa2g03537 357 Pfam Cyclin, N-terminal domain 64 193 IPR006671 -
Vifa2g03537 357 SMART cyclin_7 99 187 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03537 Vifa-Chr2 1027287152 1027289107 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03537 67 326 Core Cell Cycle Gene Families AT2G22490 50.929 2.52e-87 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03537 K18810 - gmx:547739 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03537 2 1027287152 1027289107 Vifa2g03537 2 1027287152 1027289107 ECH