Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03535 ATGGGTTATCTTTTTTGCAATGCAGAGTCTGCAATTGCTACCTGCGATCCACACTATTGGGATCTCAAAAAAAGAAACAAATCAATAACTAAAAATCGTACCCACCACGCTATCAAGGAGTTTCTCTACGCCGACCTCGTCGCCGCCACTAACGGTTTCTCCGATGGTAGCTACTTAGGTAAAGGCAGCCACGGGAGAGTTTACAGAGCAACGTTAAACGGCGGCAAAGGCAACGGAAACGGCAACGGCAGACTAGTTGTTGCCGTTAAAACAACAAAGCAAACTACGAAGATTACACATAACCATGCCGTTAACTGCACCGGTTGCGGTAACTGTACGAGTCCTGCTGAGAACGAGATCGAGATTCTTTCTCAAGTTCCGAGTCGTCGTCTCGTGAATCTTATCGGTTACTGCACTGATCCAAACGGCAATAAATTAATTGTCGTTGAATACATGCCAAACGGTTCGCTTCATGATTTATTACATTCTACATCTAAACCACCCGGTTGGACCAGACGTATCCGGTTCGCATTACATGTTGCGAAAGCGGTACGGACGTTGCACGGTTCGAACCCTCCGGTGATCCACCGTGACATTAAATCCTCCAACGTTTTAATCGACCAGGATTGGAAAGCGAGACTCGGTGACTTCGGGCTTGCACTGAGAGGACACGTGGAGGACGTTCGCGTTAAATGTACGCCACCGGCTGGGACGTTAGGGTATCTCGATCCATGCTATCTCTCGCCGGGGGATCTTAGTGCGAAGAGTGATGTATTCAGTTTTGGGATCTTGTTGTTGGAGATAATCAGTGGAAGGAACGCTATTGATGTTAATTATAGTCCTCCATCGGTTGTTGACTGGGCGGTGCCGCTGATTAGAAGAGGCGACTTCGCCGGAATCTGTGACCGGAGAATAGGAACACCTTCGGATTTGTCGGTGATGCGGCAGATTGCCGTGCTTGCTGCGAGATGTGTTAGATCGACGGCGGAGAAGCGGCCGGCGATGGTGGAGGTTGTGGAGTGTCTTAAACTGGCGGGGAAGAAGATTCATACTTCGCCGATTTGGAATAGTTTCAGGTGGCGCGTGACGCGAGTGGAGAGTGCGCAACCGTTGATGAAGTGTGACGTGTATGATTATGATTATGATTATGATTATGATTATCATAATGATTGTAATGATTGGGATAATAAGAATGATGAGGTTGTTGTGAAAATCGTAAAGAGTGGGTGTGGGAGCAGCAGAAGGAAGAGTAAAGTATCGAGTGTAGCGAGTGCAGAGTCTGTTACTAAACATTCCAAGAAAATGGCGAGATCTAAGCCGTCGAAGAAAGTAACTAGATCTAAAACCGTTGGATCTTCTTCTAGTTGTGTTAGTAGCTGTAGTAGGAAAAGTGGGATTCAAATTCAAATGGTTTCAGAGAAAACGCGTGCAATGAAGCTGAAAAAGTCAAAGTCAACGGGGATGTTGCAAGATCCTTATTTGGATGAGACTGAGAGGTTAGCATTAACCGTGTCAAAGTTAGTTATTAGAGATATTAAGAAGTTAGAAAAGTTGGAAAAGAAGATGCTTGAAAAACCGTTGGTTTATTCACATGGTTGGGAGTCTGAGTAG 1611 0.4575 MGYLFCNAESAIATCDPHYWDLKKRNKSITKNRTHHAIKEFLYADLVAATNGFSDGSYLGKGSHGRVYRATLNGGKGNGNGNGRLVVAVKTTKQTTKITHNHAVNCTGCGNCTSPAENEIEILSQVPSRRLVNLIGYCTDPNGNKLIVVEYMPNGSLHDLLHSTSKPPGWTRRIRFALHVAKAVRTLHGSNPPVIHRDIKSSNVLIDQDWKARLGDFGLALRGHVEDVRVKCTPPAGTLGYLDPCYLSPGDLSAKSDVFSFGILLLEIISGRNAIDVNYSPPSVVDWAVPLIRRGDFAGICDRRIGTPSDLSVMRQIAVLAARCVRSTAEKRPAMVEVVECLKLAGKKIHTSPIWNSFRWRVTRVESAQPLMKCDVYDYDYDYDYDYHNDCNDWDNKNDEVVVKIVKSGCGSSRRKSKVSSVASAESVTKHSKKMARSKPSKKVTRSKTVGSSSSCVSSCSRKSGIQIQMVSEKTRAMKLKKSKSTGMLQDPYLDETERLALTVSKLVIRDIKKLEKLEKKMLEKPLVYSHGWESE 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03535 536 Pfam Protein tyrosine and serine/threonine kinase 57 342 IPR001245 GO:0004672|GO:0006468
Vifa2g03535 536 SUPERFAMILY Protein kinase-like (PK-like) 28 342 IPR011009 -
Vifa2g03535 536 MobiDBLite consensus disorder prediction 421 450 - -
Vifa2g03535 536 FunFam Serine/threonine-protein kinase-like protein 152 355 - -
Vifa2g03535 536 ProSitePatterns Protein kinases ATP-binding region signature. 59 90 IPR017441 GO:0005524
Vifa2g03535 536 SMART serkin_6 53 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03535 536 PANTHER OS01G0253100 PROTEIN 32 343 - -
Vifa2g03535 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Vifa2g03535 536 Gene3D Phosphorylase Kinase; domain 1 17 151 - -
Vifa2g03535 536 Gene3D Transferase(Phosphotransferase) domain 1 152 354 - -
Vifa2g03535 536 ProSiteProfiles Protein kinase domain profile. 53 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03535 Vifa-Chr2 1025595736 1025597346 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03535 41 376 Receptor kinase-like Gene Family AT3G59420 38.123 8.87e-65 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vifa2g03535 PK_Tyr_Ser-Thr 9.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03535 - - cam:101503747 704.516