Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03533 ATGGAATTTGAGGAACACGAAGAAGATCAAGAGGAGGAGGAAGAGGAAGAAGAAGAAGAAATGGGATTTCCAATTACGCCGGTAGCTGGTTACGACTCGCTGGAAAACTCAGGCGTACGGTCCAAAATGAGCGGCGGTGTTATGGAAACCGATGGAGCAGCAGTCATCTCTACAGGCGGTGGTGTGAAGAGCGGGGCCAAAGGGACGGTGAGGTACAGAGAATGTCAAAAGAATCACGCTGTCAGTATCGGTGGTCACGCTGTTGATGGCTGTTGTGAGTTTTTAGCTGCAGGTGAAGAAGGAACACTGGAAGCCGTAATTTGCGCTGCCTGTAACTGTCACCGGAACTTTCACCGCAAAGAGATCGACGGAGAGGTCATTTCGCATAATCATCAACAACGGTCTCACTCTCAGTCTCAGTACCACCACCATCAGTTATCCGCTTACTACCACCGCGCAGCGCTACCTCCTCCACCAGGATACCACCAATTATTAACTCCACCGCCAGTTTCACATCACCGTCCGTTAGCTCTTCCACCTGTAGCATCCAGTGGAGGCTTCAGTAGAGAAGACGACGATGTGTCAATTCCAAGCAGCAGCGGAGGCGGAGGCGGAAGTGGAACGAAGAAAAGATTTAGGACGAAGTTCACACAGGAGCAGAAGGATAAGATGCTTGCATTTGCAGAGAGTATCGGATGGAGAATCCAGAAAGAAGATGAAGGTGCAATTGAACAATTCTGCGCTGAGAATTACATCAAGAGAAATGTGCTTAAGGTTTGGATGCACAATAACAAGCACACTCTTGGTAAGAAACCCTAA 819 0.4884 MEFEEHEEDQEEEEEEEEEEMGFPITPVAGYDSLENSGVRSKMSGGVMETDGAAVISTGGGVKSGAKGTVRYRECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGEVISHNHQQRSHSQSQYHHHQLSAYYHRAALPPPPGYHQLLTPPPVSHHRPLALPPVASSGGFSREDDDVSIPSSSGGGGGSGTKKRFRTKFTQEQKDKMLAFAESIGWRIQKEDEGAIEQFCAENYIKRNVLKVWMHNNKHTLGKKP 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03533 272 MobiDBLite consensus disorder prediction 1 37 - -
Vifa2g03533 272 MobiDBLite consensus disorder prediction 167 211 - -
Vifa2g03533 272 FunFam Zinc-finger homeodomain protein 2 198 270 - -
Vifa2g03533 272 Coils Coil 1 21 - -
Vifa2g03533 272 MobiDBLite consensus disorder prediction 1 22 - -
Vifa2g03533 272 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 50 268 - -
Vifa2g03533 272 SUPERFAMILY Homeodomain-like 198 270 IPR009057 -
Vifa2g03533 272 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 72 121 IPR006456 -
Vifa2g03533 272 Pfam ZF-HD protein dimerisation region 70 122 IPR006456 -
Vifa2g03533 272 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 71 122 IPR006456 -
Vifa2g03533 272 NCBIfam homeobox domain, ZF-HD class 209 265 IPR006455 -
Vifa2g03533 272 Gene3D - 195 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03533 Vifa-Chr2 1025090669 1025091487 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03533 1 268 ZF-HD Transcription Factor Family AT4G24660 45.956 3.63e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vifa2g03533 ZF-HD_dimer 2.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03533 - - mtr:11435175 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03533 2 1025090669 1025091487 Vifa2g03533 2 1025090669 1025091487 ECH