Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03516 ATGAAAGGAGAATACGTAGATCAACATTCAAAGCTTCACCACTCACAGTCACAGTCACAAAACAATCCATTTCTTCCTTTCCAGCTCTCCCATCATGAATGTCAAACAGTCGGTGAAGACGAGAACCGTTCCGGCGGTGGCGCAGGCGCTCAGAAACCGAACTCTTCTGGCGACGGAGCTACCATTGAGGTTGTCAGGCGGCCTAGAGGACGTCCGCCTGGATCTAAAAACAGGCCTAAACCTCCTGTTATCATAACACGCGATCCTGAACCTGCTATGAGTCCTTTTATTCTAGAAGTTTCTGCGGGAAACGACGTCGTTCAAGCGGTTGCTGAGTTTAGTCATCGTAGAAATATTGGTTTATGTGTTCTAACTGCTTCAGGAGCTGTTGGTAATGTTACTCTTCGTCAACCGTCAACTACGCCGGGAACCACCGTTACTTTTCACGGCCGGTTTGATATTCTATCCTTAACCGCTACTTTTCTTCCTCAATCAACCGGTGCTTCTTCTCCATCTCTTCCTAGCGCCTTCTCCATCTCACTCGCCGGTCCACAGGGACAGATCGTCGGAGGAATTGTTGCTGGAAACTTGTTAGCTGCGGGGACGGTGTTTGTTATCGCTGCTTCGTTTAATAATCCTTCTTATCATAGGTTGCCTCCGGAGGAAGAAGGCGGAAACTCAGTGTCAGGCGGTGATGGAATTTCTCCACCTGTTTCCGGTGCGGTGGATAGCGGTCAAGGTCAAGGCGGTGGTGACTCGTGCGGGATGTCTATGTACAGCTGTCATTTGCCACCGTCTGATGTGATTTGGGCTCCATCTGTCAGACCACCACCACCTTACTGA 843 0.497 MKGEYVDQHSKLHHSQSQSQNNPFLPFQLSHHECQTVGEDENRSGGGAGAQKPNSSGDGATIEVVRRPRGRPPGSKNRPKPPVIITRDPEPAMSPFILEVSAGNDVVQAVAEFSHRRNIGLCVLTASGAVGNVTLRQPSTTPGTTVTFHGRFDILSLTATFLPQSTGASSPSLPSAFSISLAGPQGQIVGGIVAGNLLAAGTVFVIAASFNNPSYHRLPPEEEGGNSVSGGDGISPPVSGAVDSGQGQGGGDSCGMSMYSCHLPPSDVIWAPSVRPPPPY 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03516 280 MobiDBLite consensus disorder prediction 12 29 - -
Vifa2g03516 280 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 212 IPR005175 -
Vifa2g03516 280 FunFam AT-hook motif nuclear-localized protein 94 229 - -
Vifa2g03516 280 CDD DUF296 95 210 IPR005175 -
Vifa2g03516 280 Gene3D - 94 229 - -
Vifa2g03516 280 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 22 271 IPR014476 GO:0003680
Vifa2g03516 280 PIRSF ESCAROLA 2 270 IPR014476 GO:0003680
Vifa2g03516 280 ProSiteProfiles PPC domain profile profile. 90 231 IPR005175 -
Vifa2g03516 280 SUPERFAMILY AF0104/ALDC/Ptd012-like 92 225 - -
Vifa2g03516 280 MobiDBLite consensus disorder prediction 217 253 - -
Vifa2g03516 280 MobiDBLite consensus disorder prediction 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03516 Vifa-Chr2 1019497256 1019498098 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03516 58 280 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 65.066 5.88e-98 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03516 - - gmx:100788098 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03516 2 1019497256 1019498098 Vifa2g03516 2 1019497256 1019498098 ECH