Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03514 ATGATAAGAATAAACAAGGGAAAGTGGTTTGGGAACCCAAGAAGAAAATCTAAAATGAGGAGGCTTAGTTCGCTTTACAGTGGCCATATCACCAATACTATATTTCTGGTTGCACTTCTTCTGTTACACTTACACAATTCCTCTACTCAACTTATCCTTGCAAATTCTACTTCCATCGTCAAGTTCCTTCCTGGTTTTCAAGGACCTCTTCCTTTTCTACTAGAAAGTGGCTACATTCAAGTTTCTGAAACTGAAACTGATGACACAGCTGAAGTTTTCTATTATTTTATAGAGTCTGAGAACAATCCTAAGGAGGATCCTCTCTTGCTTTGGCTAACCGGCGGTCCTGGTTGCTCCTCCTTTACTGGTCTAGCCTTTGAAATAGGTCCAATAACATTTAAAAACGAGGAATACAGCGGAAGCTTACCGAATTTGGTATTGAAGGCTCATTCATGGACAAAGGTAAGTAGTATTATATTTTTGGATTTGCCTGTTGGAACTGGATTCTCTTATCCCAATACAGAAAATGCTGCTCAACAAAGCACATCGAAGCTTGTTCGCAATGCTCATCAATTTCTTCTAAAGTGGCTGATTGATCATCCAGATTTTATCTCAAATCAAGTGTACATTGCTGGTGACTCGTATTCGGGCCTTCCTGTCCCAATTATTGTTCAAGAAATTTCTTATGGAAATGAAGGTGGTTTACAACCATGGATAAACCTTCAAGGATACATACTAGGAAATCCTGTAACAAAGGTGTACAACAAAAATTACCAAATACAATTTAATCATGGCATGGCAATTATTTCTGATGAACTTTATAAGTCGCTACAACAGAACTGTGGAGGCCAGTATAGAAAAATAGATCCTGAAAACGTGCTTTGTCAAAAAGACATTCAATCCTACGAAGAGACTATTTCAGGAGTGAATGTAGTTCATATTTTGGAACCAGATTGCGGTGTTGATTGGCATGATTCACGTGAACTTTCTAGAAAAATGCTTCTCATTACAAATGCTTCTCTCAAACTGCCACCTTTAAGCTGTCGGACTTACGGATATTTCCTTGCTGGCTATTGGACTAACAATGAGAATGTTCGCAATGCATTACACATTAGAAAGGGAAGTATAAGGAAATGGAATCGATGCAATTATGGCATCCCTTTTAAGCACGAAATTATTAGCAGCTTCCCGTATCATGCAAATCTTAGCAGAAAAGGCTATCGTTCATTAATATACAGCGGGGATCATGACATGATGGTTCCATTCTTGGATACTCAAGCATGGATAGCATCTTTAAACTACTCCATAGTGGATGATTGGAGGCAATGGTATTCAGATGGTCAAATAGCAGGATACACAAGAACTTACTCAAATCGAATGACATTTGCGACTATAAAGGGAGGAGGACATACAGCTCCGGAGTACAAGCCAAAAGAATGCTTCGCCATGTTTAGTAGGTGGCTATCTAATAAGGAACTCTAA 1482 0.3873 MIRINKGKWFGNPRRKSKMRRLSSLYSGHITNTIFLVALLLLHLHNSSTQLILANSTSIVKFLPGFQGPLPFLLESGYIQVSETETDDTAEVFYYFIESENNPKEDPLLLWLTGGPGCSSFTGLAFEIGPITFKNEEYSGSLPNLVLKAHSWTKVSSIIFLDLPVGTGFSYPNTENAAQQSTSKLVRNAHQFLLKWLIDHPDFISNQVYIAGDSYSGLPVPIIVQEISYGNEGGLQPWINLQGYILGNPVTKVYNKNYQIQFNHGMAIISDELYKSLQQNCGGQYRKIDPENVLCQKDIQSYEETISGVNVVHILEPDCGVDWHDSRELSRKMLLITNASLKLPPLSCRTYGYFLAGYWTNNENVRNALHIRKGSIRKWNRCNYGIPFKHEIISSFPYHANLSRKGYRSLIYSGDHDMMVPFLDTQAWIASLNYSIVDDWRQWYSDGQIAGYTRTYSNRMTFATIKGGGHTAPEYKPKECFAMFSRWLSNKEL 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03514 493 FunFam Serine carboxypeptidase-like 11 54 493 - -
Vifa2g03514 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 196 221 IPR001563 GO:0004185|GO:0006508
Vifa2g03514 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 171 IPR001563 GO:0004185|GO:0006508
Vifa2g03514 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 148 160 IPR001563 GO:0004185|GO:0006508
Vifa2g03514 493 PRINTS Carboxypeptidase C serine protease (S10) family signature 460 473 IPR001563 GO:0004185|GO:0006508
Vifa2g03514 493 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 58 477 IPR001563 GO:0004185|GO:0006508
Vifa2g03514 493 Pfam Serine carboxypeptidase 64 490 IPR001563 GO:0004185|GO:0006508
Vifa2g03514 493 SUPERFAMILY alpha/beta-Hydrolases 60 491 IPR029058 -
Vifa2g03514 493 FunFam Carboxypeptidase 395 490 - -
Vifa2g03514 493 Gene3D alpha/beta hydrolase 70 493 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03514 Vifa-Chr2 1019049258 1019051844 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03514 54 88 Calmodulin-binding Proteins AT2G22960 62.857 1.49e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03514 K16296 - gmx:100792006 635.18