Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03513 ATGGTGACAAACAACCATCGCCACCACATGGCTCCTTCATTTTCATTCTTCAAAACTCTCAGTCTATTATTACTACTATCGCAACACTTTTTAACCGTTGCTATTGCTTTCACACAGAACATCACAGATACCAGTCCACCTCCGTCTCCCGTTCCCGACGACGCCACTACGAACTCTCAACCTCAACAAACCACCTACACAAAAATAAAACCAAGCGTCGCGATTCTCGTTTGCGTTTTCACCGTTCTCTTTTCTCTCACCTCTGTGCTTCTCCTCTACGTGAAACATGTCAATTACATCGCCGCCCCTGGCGAGATAGGTAATATTGAAAGCGGCGGCAGTTTGTATTTTAACGGCGGGAGAAAAAACTCCGGGATAGACCGTTCTGTGGTTGAATCGTTGCCGATTTTCAGATTCGGATCACTTACAGGTCAAAAGGATGGTTTAGATTGTGCGGTTTGTCTTTGTAAATTCGAATCGTCACAAGTTTTACGGTTATTGCCGAAATGTAAACACGCTTTTCATGTGGAGTGTGTTGATACGTGGCTGGATGCACATTCAACTTGTCCTCTTTGCCGTTCTAGAGTCGATCCTGAAGATGTTCTTCTGGTAGTGGAAGATAAAGATTCTTCATCATCATCAACAACACCGTACCAGATTGACAATCAGAATCAGAAGGAAGAAGAAAATGAAAATGAAAATGTGATTGAATTTGAAAGAGCAAGAGTATCTAGAAACGAGATTGTAGAGAATTATGGAAAGAGGCATTCGTCGGTAGGGGAAAAGGAATGGGAACGAGAACGAGAAAGGAAGAAAACGGCGTCGTTTAGATGGTCTCTGGATAGTTCTAGAAAGAAGAGCGAGAGTAGCATTGGGCTTGGGCTTGGGCTTGGTTGTTTTGCTGGGCCGAGAAAAGATGGGATGTTGTTAACGAAAGAAGAGAGTAGCGTGGAGCGGAGAAAGAGGTTGGAGCATCGGATTATTGTGTCACCATCAGTGAGGAGGCTCCACCAGAATCAACGGTGGAGTGATGTGCAACCGTGTGATATGTTGTATCTAACTTCAGAGATGATGATAATGAGTGGAGTAAAGAATGTGAATGGGAGGAATAATGGAAGTAGTTGGAGTGGCAGGGGAGTAATTAATTCGAGAAGTGTGTCTGAAATCACGGGACTCAGCAGGTTCCAAAGCAACAGCACAGAGCAATAG 1209 0.4409 MVTNNHRHHMAPSFSFFKTLSLLLLLSQHFLTVAIAFTQNITDTSPPPSPVPDDATTNSQPQQTTYTKIKPSVAILVCVFTVLFSLTSVLLLYVKHVNYIAAPGEIGNIESGGSLYFNGGRKNSGIDRSVVESLPIFRFGSLTGQKDGLDCAVCLCKFESSQVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRSRVDPEDVLLVVEDKDSSSSSTTPYQIDNQNQKEEENENENVIEFERARVSRNEIVENYGKRHSSVGEKEWERERERKKTASFRWSLDSSRKKSESSIGLGLGLGCFAGPRKDGMLLTKEESSVERRKRLEHRIIVSPSVRRLHQNQRWSDVQPCDMLYLTSEMMIMSGVKNVNGRNNGSSWSGRGVINSRSVSEITGLSRFQSNSTEQ 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03513 402 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Vifa2g03513 402 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 47 399 - -
Vifa2g03513 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 200 IPR013083 -
Vifa2g03513 402 SUPERFAMILY RING/U-box 132 198 - -
Vifa2g03513 402 MobiDBLite consensus disorder prediction 207 223 - -
Vifa2g03513 402 SMART ring_2 151 192 IPR001841 -
Vifa2g03513 402 MobiDBLite consensus disorder prediction 44 63 - -
Vifa2g03513 402 FunFam RING-H2 finger protein ATL43 126 200 - -
Vifa2g03513 402 Pfam Ring finger domain 150 193 IPR001841 -
Vifa2g03513 402 CDD RING-H2_EL5-like 150 193 - -
Vifa2g03513 402 MobiDBLite consensus disorder prediction 206 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03513 Vifa-Chr2 1018364375 1018365583 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03513 67 394 C3H Transcription Factor Family AT5G05810 46.023 1.76e-74 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03513 K19041 - cave:132189697 266.544