Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03510 ATGGTAGAGGATAGACGAAATGCTGATGATCCTTACAACTCAAACTGTGTAAGAAGCTCTGGTCAACCATCAACTGCAAGTATAATTACTGCACCTAATTTTGTATACAGGAGAAAAAAGCTACGCAAGGGATCAACTGCCCCTCTTTTCAAGCTTGGGCCAACTGATGTGCAGACAATTGCCAATATCCCTTCAGTAATAAGTTCCTCTTTGCATCTATCATCAGCTGAGGATCAAACAGCTGATTTTGTAGTTGAGCATCAAATTGAAATGGTTAAAGAACCTACTCTGCCTCCTGTCTTACTTGAAGAAGCAGCCAAAGATATCACACAGAAAAAATTAGGTATTGGCAGTGTAAATGATAGTTGTTCCTCTTCAAAGTCAAATATGGCACTTGTTTCAGATTCCTTAGATACTGAGATGGATAACACTGGAGAATGCTCTTCGTCCGGTGTAATAGGAATGGATGTTGCAAGTGAAGATTTAACAGAAAAGGAGTTCTGCGTTAATATTTTAAGAAGCTATGGACTTCTTAGAGGAGATACTGTTACAGATAATGTGGTTTCCATTGAAGATGCTGTTACCATTGGTAATAACTACTGTTCCAGGTCATGCAAAATATGTGGTCATGTGGACAGTTCAGTGGAAATGCTTTTATGTGATCATTGTGAAGATTCATATCATCCATGTTGCTACAATTCACGTTTGAAAAAAATACCAATTGATGAGTGGTTTTGTCATTCATGTTGTAATAAAAGGCAGAAAATTCTTAAGGAGACAATTATCAAATCACCAGGCATCAATAGTGAAATGAGGAAATGTAGAACTGCCTCTATTAAGGGTGAAATGATGAATCCCATACTGTCGATGTTGAGAGACCCTGAGCCATATACAAGTGGTGTGCGAGTTGGTAAAGGTTTTCAAGCTGCAGTACCTGACTGGTCAAGCTCTGTAAAAAGTGATGTAGACAACTTTCCAGAACCATTGGAAATTAATCCTTCAGAGTCTTATAGAATGCAGGAAGAAAATATGAGAAATCCAGTTAGAGTCACCATTGGCAATTGGCTTCAGTGCCAGGAGGTTATAGATAAAACTAGCGAAACAATATGTGGAAAATGGCGAAGGGCTCCACTATTTGAAGTTCAAACCAATGGCTGGGAGTGCTTCTGTGCTATTCATTGGGATCCATCTCATGCTGATTGTTCTGTACCTCAGGAGGTGGAGACAGATGAAATTCAAAAGCAACTGAAGTATATTGAAATGCTGAGACCGCGACTTGCTGCTAGACAGAAAATCAGATTGCTCAAATAA 1311 0.3905 MVEDRRNADDPYNSNCVRSSGQPSTASIITAPNFVYRRKKLRKGSTAPLFKLGPTDVQTIANIPSVISSSLHLSSAEDQTADFVVEHQIEMVKEPTLPPVLLEEAAKDITQKKLGIGSVNDSCSSSKSNMALVSDSLDTEMDNTGECSSSGVIGMDVASEDLTEKEFCVNILRSYGLLRGDTVTDNVVSIEDAVTIGNNYCSRSCKICGHVDSSVEMLLCDHCEDSYHPCCYNSRLKKIPIDEWFCHSCCNKRQKILKETIIKSPGINSEMRKCRTASIKGEMMNPILSMLRDPEPYTSGVRVGKGFQAAVPDWSSSVKSDVDNFPEPLEINPSESYRMQEENMRNPVRVTIGNWLQCQEVIDKTSETICGKWRRAPLFEVQTNGWECFCAIHWDPSHADCSVPQEVETDEIQKQLKYIEMLRPRLAARQKIRLLK 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03510 436 ProSitePatterns Zinc finger PHD-type signature. 205 249 IPR019786 -
Vifa2g03510 436 SUPERFAMILY FYVE/PHD zinc finger 191 254 IPR011011 -
Vifa2g03510 436 Pfam PHD-finger 205 251 IPR019787 -
Vifa2g03510 436 Gene3D - 353 418 - -
Vifa2g03510 436 SMART PHD_3 204 250 IPR001965 -
Vifa2g03510 436 ProSiteProfiles Zinc finger PHD-type profile. 202 252 IPR019787 -
Vifa2g03510 436 FunFam uncharacterized protein LOC106759733 isoform X4 353 418 - -
Vifa2g03510 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 256 IPR013083 -
Vifa2g03510 436 ProSiteProfiles Zinc finger CW-type profile. 349 409 IPR011124 GO:0008270
Vifa2g03510 436 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 191 264 IPR047171 GO:0006338
Vifa2g03510 436 MobiDBLite consensus disorder prediction 1 24 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03510 205 249 C2H2 Transcription Factor Family AT3G01460 44.444 2.23e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa2g03510 PHD 1.6e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03510 - - mtr:11430602 675.241