Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03509 ATGAACACAAACAAAGCAGAAGCTGAACGGTTACTCGAAATCGGCGAAGAGCTTCTTCAGAAACGAGATCTGAAAGGCTCACGAGAATTAGCGATTCTGGTCCAAGAAACCGAGCCTCTTCTAGAAGGTTCCGACCAGATCCTAGCCATCGTCGATGTTCTAGAAGCAGCCGAGAAGCCTCTGAATCTGAACAGCCAGCACCTGGATTGGTACGCGATACTTCAAATTGATCGAAAATCGCGCGACTCGCGAGATCTGAATCTCATAAGGAAACAGTATCGAACTCTGGCTCTTCTTCTTCATCCTGATAAGAATCCGTTTTCGTTTGCTGAATTGGCTTTCAAGCTTGTTTCTGATGCTTGGGCCGTTTTGAATGACCCGGCCCAAAAGGCCCAATATGATAGGGGGTTTGAAGTGGAGACGAATGGTTTGGGTAGTTTTTGGACTGCTTGTCCTTATTGTTACTGTTTGTATGAGTATGCTAAGGTTTATGAGGGGTGTTGTTTGATGTGTCAGAAATGTGATAAGTCCTTTTCTGGGGTTGAGGTTCCGAATCTTCCGCAGTTTGTTCCCGGGGAAGAGGCTTATTATGTTTCTTGGGGGATGTTTCCGATGGGGTTTGTGTTTGAAACTTTGGAAAATGGTGGTGGTGAGGGTGGTTCTGCTAAGAGAAAATGA 678 0.4558 MNTNKAEAERLLEIGEELLQKRDLKGSRELAILVQETEPLLEGSDQILAIVDVLEAAEKPLNLNSQHLDWYAILQIDRKSRDSRDLNLIRKQYRTLALLLHPDKNPFSFAELAFKLVSDAWAVLNDPAQKAQYDRGFEVETNGLGSFWTACPYCYCLYEYAKVYEGCCLMCQKCDKSFSGVEVPNLPQFVPGEEAYYVSWGMFPMGFVFETLENGGGEGGSAKRK 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03509 225 Pfam DnaJ domain 69 134 IPR001623 -
Vifa2g03509 225 PRINTS DnaJ domain signature 109 129 IPR001623 -
Vifa2g03509 225 PRINTS DnaJ domain signature 93 108 IPR001623 -
Vifa2g03509 225 ProSitePatterns Nt-dnaJ domain signature. 114 133 IPR018253 -
Vifa2g03509 225 ProSiteProfiles dnaJ domain profile. 69 137 IPR001623 -
Vifa2g03509 225 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 214 - -
Vifa2g03509 225 CDD DnaJ 69 126 IPR001623 -
Vifa2g03509 225 SUPERFAMILY Chaperone J-domain 65 137 IPR036869 -
Vifa2g03509 225 Gene3D DnaJ domain 55 145 IPR036869 -
Vifa2g03509 225 SMART dnaj_3 68 129 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03509 Vifa-Chr2 1017511304 1017511981 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03509 2 222 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 50.000 1.78e-79 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03509 - - tpra:123915791 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03509 2 1017511304 1017511981 Vifa2g03509 2 1017511304 1017511981 ECH
Vifa1g01177 1 191747127 191748269 Vifa2g03509 2 1017511304 1017511981 PCT