Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03508 ATGGCGTATTCAGGATCAATTCGATTGTCTAGTATTGGAAGCTGTAGTTTTTGTCATAAACCGAATCCCGGTAGTCGGTTATGTTTTGTTGCCTTCAATCGTTTGCGCCATGGTTCGAGAACCGAGTCTTCGCCGCACATCTCTTCCCGATTATATAGTCAAATTAAGCTTACACCATCTAGTTGTAATGTTTTGTTGTGCCGATCTGCACTTGTACCGGCTGGAGGGTGTGAGGCTCCGCTGATAAAAGTGGCGACTGTTTCTTTGTCAAGGTCATATAATGCTATATCAGGAAGACCGATTGTGCTTCAATTGGTCCCTGTCCTCGGTATCATTGGCTTTGCGGTCTTTGGTCTTGAACCTCTCCTGCGCTTTTGCGGATCTCTATTTCTCCAAGAATGGTCTGATAGAAGTTGGAAGAAAAGTAATTCATATTATATAATGACATCTTATTTCCAACCTTTGCTGGTGTGGACTTCCGTACTGCTCATCTGCAGGAGTTTAGATCCACTAGTCCAGCAATCAAAAACCAGTCCAGTTATTAAGCAACGGCTGCTGAGTTTTGTCAAATCTTTTTCAACCGTGTTTACATTTGCTTACTGTTCTTCAAGCTTTGTTCGACAAGCACAAAAGTTGTGTATGGAGACAAATGGCTCGAGTGTTGAAAGAAATATGAGCATTGATCTTATCGGGAAAGCTGTATATACCGCAATATGGGTTGCTGCCGTGTCATTGTTCATGGAGTTGCTGGGTCTCTCCACCCAGAAGTGGTTGACTGCTGGTGGTATGGGTACAGTGTTGCTTTCGATTGCGGGTCGTGAGATATTCACGAACTTCCTTTCAAGTTTGATGATTCATGCAACTCGGCCGTTTGTTGTGAACGAGCGGATTAAAACCAAGATAAAAGGATATGAGGTTTCTGGTAGAGTTGAGCATGTAGGCTGGTGGTCACCAACAGTTGTTAGAGGTGCTGATTGTGAAGCAGTTCACATTCCTAATCACAAGTTGAGTGTAAATGTTGTAAGGAATCTTAGTAAGAAAACTCACTGGCGCATCAAAACTCACCTTGCTATCAGTCACTTGGATGTTAACAATATTAACAGCATCATAGCTGATATGCGCAAGGTTTTGGCCAAAAATCCTCTAGTTGAGCAAAGAAAATTGCACAGAAGGGTTTTTCTGGAGGATGTCAATCCAGAAAATCAAGCTCTCATGATATTAGTATCTTGCTTTGTTAAAACTTCACATTCTGAAGAGTACCTCCGTGTTAAGGAGGCCATTCTGTTGGATCTTCTAAGAGTCATCAGTCATCATGGAGCTCGGCTAGCCACACCCATCCGCACAATTCAGAAGATGTACAGTGATTCTGATTTAGAAATTGATCCATTTGACGCCGCCATTTTCACTCGTTCTAGAGCAAAGGGAAACCACTCTGTCCCATTCATTGACGACAGTGAAAAAATTGCAGCAACATGGACTCCCTCTTCCAGTGTAAAGTCCCAGGATAAGTTTAAGTCACCGTCTCAAGCCAAGCCGCAGAATGTCGGTTCTGATAATTCTGTGCCGAAGGCCGCTAAATCGAGAACAGCACCCCAAATTTTATCATCACCCAATGGAACTTCACCCTCTAAGAAAGATGAAGAAAAATGA 1650 0.4285 MAYSGSIRLSSIGSCSFCHKPNPGSRLCFVAFNRLRHGSRTESSPHISSRLYSQIKLTPSSCNVLLCRSALVPAGGCEAPLIKVATVSLSRSYNAISGRPIVLQLVPVLGIIGFAVFGLEPLLRFCGSLFLQEWSDRSWKKSNSYYIMTSYFQPLLVWTSVLLICRSLDPLVQQSKTSPVIKQRLLSFVKSFSTVFTFAYCSSSFVRQAQKLCMETNGSSVERNMSIDLIGKAVYTAIWVAAVSLFMELLGLSTQKWLTAGGMGTVLLSIAGREIFTNFLSSLMIHATRPFVVNERIKTKIKGYEVSGRVEHVGWWSPTVVRGADCEAVHIPNHKLSVNVVRNLSKKTHWRIKTHLAISHLDVNNINSIIADMRKVLAKNPLVEQRKLHRRVFLEDVNPENQALMILVSCFVKTSHSEEYLRVKEAILLDLLRVISHHGARLATPIRTIQKMYSDSDLEIDPFDAAIFTRSRAKGNHSVPFIDDSEKIAATWTPSSSVKSQDKFKSPSQAKPQNVGSDNSVPKAAKSRTAPQILSSPNGTSPSKKDEEK 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03508 549 Pfam Mechanosensitive ion channel 232 441 IPR006685 GO:0016020|GO:0055085
Vifa2g03508 549 Gene3D - 185 289 - -
Vifa2g03508 549 MobiDBLite consensus disorder prediction 493 549 - -
Vifa2g03508 549 SUPERFAMILY Sm-like ribonucleoproteins 275 345 IPR010920 -
Vifa2g03508 549 Gene3D - 290 343 IPR023408 -
Vifa2g03508 549 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 39 530 IPR045042 -
Vifa2g03508 549 MobiDBLite consensus disorder prediction 493 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03508 Vifa-Chr2 1017503348 1017508758 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03508 60 513 Mechanosensitive Ion Channel Family AT1G58200 59.031 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03508 K22047 - mtr:11434686 901.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03508 2 1017503348 1017508758 Vifa2g03508 2 1017503348 1017508758 ECH