Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03505 ATGGTGTACCCGTGTTCAATGCAATTTTCTTGTGATGTTAGGCTCAAAACTAATAATAATGGACCAAGTAGTTTCCACCATCATAATTCGGTGCGGGTTCGTCGTTTACATTTGGTCACTATGAATCTTTTACCGCGTACTTTGAAACGAGATTCTTTGGGACTTCATTTGTTGAGTAGAGTACATGCGCCAATAAGGAAGACTCCTTCCAGATGCAGTGTTTTTGTATGTCGGTCTGCCATGCTACCAGGTGGAGGGAGTGGGACTGCCCTCGTGAAATCTGCTAGCGTTTTATTAACAAGGTCATATGATTCTTTACTGGGAAGCCCTATTTTGCTTCGATTGATCCCAGCCCTTGGTATTATTGCCTTTGCTGTTTATGGTATAGAGCCTCTTCTTCGTCTCAGCAGGATTCTATTTCTTCAAAGGACTGACGGTAGTTGGAAGAAAAGTAGTTCACGATATGTTATGACATCATATTTTCAGCCATTATTGTTGTGGACTGGGGCAATGCTCATATGCAGGGCACTAGATCCAATTGTTCTGCCATCTCCGAATAGCCAGGTTGTGAAGCAACGACTGCTTAACTTTGTGAGATCTTTGTCAACAGTGATTTCATTTGCATACTGTTTATCAAGCTTAATTCAACAAGCTCAAAAATTCTTTTTGGAGGCAAATGAATCCAGTGATGCAAGAAATATGGGCCTTGATTTTGCTGGGAAGGCAATATACACTGCTGTATGGGTTGCTGCTGTGTCACTGTTCATGGAATTGCTAGGTTTCTCCACACAGAAGTGGTTAACTGCTGGTGGTTTGGGCACAGTATTGCTTACTCTTGCCGGTCGGGAGATATTTACGAACTTCCTGTCAAGTATAATGATCCATGCAACTCGGCCATTTATATTGAATGAGTGGATTCAAACAAAGATTGAAGGATACGAGGTTTCTGGCACTGTTGAGCATGTGGGCTGGTGGTCACCAACCATTATTAGAGGTGATGATCGTGAGGCAGTTCATATTCCTAATCACAAGTTCACTGTCAATGTTGTGAGAAATCTGACTCAGAAATCTCATTGGCGTATCAAGAGTTACATTTCTATCAGTCACTTGGATGTTAACAAAATTAATAGTATTGTAGCAGATATGCGCAAGGTTTTGGCTAAAAACCCTCAAGTGGAGCAGCAGAAATTGCACAGAAGGGTATTTTTGGAAGATATCAATCCTGAAAACCAAGCTCTAAAGATATTGATATCATGCTTTGTGAAGACTTCACATTTTGAGGAGTACCTCTGTGTTAAGGAGGCAATCCTTTTGGATCTTCTCAGAGTTGTCAGTCATCATCGAGCTCGGTTAGCCACTCCTATCCGCACAGTTCAGAAAATATACAGTGAGCCTGCCTCAGAAAATATTCCCTTTGGCGATGGCATTTTTACTCGATCCAGAGCAGCAGTAAATCGTCCATTCCTACTGATAGAACCACCATATAAAGTTAATGGTGACGATAAAGTTAAGCCGTCAACTCGATCAACTCGGGGCAACGAGGAAAAAGATGCTAAGATAGAGGAACCAGTGGCATCTGACTCCAAAAGTGATGAGAATTTTGCAGGAACATCAACCTCTCCACTTGGTGTGAACTCCAAGGATAAGTCCAAGTCAAATTCTGACGCTCAAATCCAGAACATGGGTTCCGATAGTTCAGTGGAGAAGACCACCAAAACCTTGCAGCCTAAAAAAGAAAGTACTGGAGATGTAGGAAAGGGAACTACAATTCCTGTATCTAAAAACCTTGCACAAATTAGGCCTCCCTTAGAAGAGAATATTCTTCTCGGTGTTGCACTTGAAGGCTCAAAACGAACCCTTCCAATTGAGGAAGAAGTTAGTCCATCTCCTAACTCGGCTGAGTCACAGGAATTTGCTAACAATGACTAG 1929 0.4199 MVYPCSMQFSCDVRLKTNNNGPSSFHHHNSVRVRRLHLVTMNLLPRTLKRDSLGLHLLSRVHAPIRKTPSRCSVFVCRSAMLPGGGSGTALVKSASVLLTRSYDSLLGSPILLRLIPALGIIAFAVYGIEPLLRLSRILFLQRTDGSWKKSSSRYVMTSYFQPLLLWTGAMLICRALDPIVLPSPNSQVVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKFFLEANESSDARNMGLDFAGKAIYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFILNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLTQKSHWRIKSYISISHLDVNKINSIVADMRKVLAKNPQVEQQKLHRRVFLEDINPENQALKILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYSEPASENIPFGDGIFTRSRAAVNRPFLLIEPPYKVNGDDKVKPSTRSTRGNEEKDAKIEEPVASDSKSDENFAGTSTSPLGVNSKDKSKSNSDAQIQNMGSDSSVEKTTKTLQPKKESTGDVGKGTTIPVSKNLAQIRPPLEENILLGVALEGSKRTLPIEEEVSPSPNSAESQEFANND 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03505 642 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 4 638 IPR045042 -
Vifa2g03505 642 SUPERFAMILY Sm-like ribonucleoproteins 284 354 IPR010920 -
Vifa2g03505 642 Gene3D - 194 298 - -
Vifa2g03505 642 MobiDBLite consensus disorder prediction 625 642 - -
Vifa2g03505 642 MobiDBLite consensus disorder prediction 495 593 - -
Vifa2g03505 642 Gene3D - 300 355 IPR023408 -
Vifa2g03505 642 MobiDBLite consensus disorder prediction 618 642 - -
Vifa2g03505 642 Pfam Mechanosensitive ion channel 241 448 IPR006685 GO:0016020|GO:0055085
Vifa2g03505 642 MobiDBLite consensus disorder prediction 497 528 - -
Vifa2g03505 642 MobiDBLite consensus disorder prediction 530 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03505 Vifa-Chr2 1016608721 1016614741 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03505 23 639 Mechanosensitive Ion Channel Family AT1G58200 56.250 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03505 K22047 - gmx:100777815 980.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03505 2 1016608721 1016614741 Vifa2g03505 2 1016608721 1016614741 ECH