Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03503 ATGGGAAGAAGGTCCAAAAGCTTCTCCTTTTTTCTCTTCTCGTCGCTGCCCGACATCACCGGCTTCCACCACAACCATGTCTTCTCTTCATTTCAACCTCCATCCACTCCCTCCATCTTCATCTCCACTACTCACCACCACCAACAACATTTCTTCCTTCTCCCCCACTTCCCTCTCCATCTTCTACAACAACCACCACCACCTTCTTCGCTTCAATCTCATCGGGATTTGAAGCCGCAGAATTTGCTTCTCGATCAACAGCAAGGGATTTTGAAGATTGCTGATCTTGGTCTTGGGAGGGCTTTTACCGTCCCGCTTAAGAGTTATACTCATGAGATTGTTACTCTTTGGTATAGAGCTCCTGAAGTTTTGCTTGGATCTACTACCTACTCTACTAGAGTTGATATCTGGTCTGTTGGATGTATCTTTGGTGGATTCGCGGCAGTGATGTGTAGCGGAACTCAAATGGAAATACCCTACAAAACATCAGAAGAATCGTCTGGTTCATCATCATCATTTTCGAACGAATTTGTTGCGATTAAGATGCCATTAACACCGAGTCCAACTCCGACTCACAAGAAGGTGAATTTTCTTGTGACTTCACGTTCTGTTGATGCTGCTCCAATTGTGGATAGTGATAGTAACAATCTAGGGAATTTGACCACAAGAGGAAAATCGTCGAGTGCTAGAAGTATTATGCCGAAATTGAACTTTCCGTATAATAGGACTTCATCATCTGATGTTGAAAAGGCGATAAGTTTGGCTCCGGAAAGTCCTTGTGAGAAGCCTTCTGTCTCTGGATCAGGATCAGTGTCTTTGAGTAAGCTGTTTGCTCCTAAGATTTATAGAACTTCTTCGTTACCGGTTGAAGAAATCGGGCGTGTTAATAATGAGTTTGCTTTTGGTGGATGTCTTGGTGCTTCTCCATATAGAAGCCAGGGATCGATAGCTCGCACTCGTTCAGAGCCGGTAGATAGCAAAGAAAAAATCATAAGGAAAATGGATAAGTTTTTCCGCATTATTCCTTCCACCCCAGGTGCAAAGGAAGTTAAAGAATGGTTAAAAGCTTCTGCAGAAAAGGATACAGTTAAAGAATGGTTAAAAGCTTCTGCAGAAAAGGATACAGTTAATTTGATTAAGGATACTGTTACTCCGGTTAATTTGATTGGTTATGGGTTGGCGTTTTTGGGGGTTGCGTATTATAATCATTCCAAGTTGCAGGCGCTTAAGGCTTCGGAGACGCAGAAGAAGGCTCTTCAGAATGATGAAGAGGCTGGAAGGTTGTTGGAACAGAGAGACGGAGAAGGGACTGGAAGGAAGATTGACAGCCAGAACTGA 1338 0.4335 MGRRSKSFSFFLFSSLPDITGFHHNHVFSSFQPPSTPSIFISTTHHHQQHFFLLPHFPLHLLQQPPPPSSLQSHRDLKPQNLLLDQQQGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTTYSTRVDIWSVGCIFGGFAAVMCSGTQMEIPYKTSEESSGSSSSFSNEFVAIKMPLTPSPTPTHKKVNFLVTSRSVDAAPIVDSDSNNLGNLTTRGKSSSARSIMPKLNFPYNRTSSSDVEKAISLAPESPCEKPSVSGSGSVSLSKLFAPKIYRTSSLPVEEIGRVNNEFAFGGCLGASPYRSQGSIARTRSEPVDSKEKIIRKMDKFFRIIPSTPGAKEVKEWLKASAEKDTVKEWLKASAEKDTVNLIKDTVTPVNLIGYGLAFLGVAYYNHSKLQALKASETQKKALQNDEEAGRLLEQRDGEGTGRKIDSQN 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03503 445 SMART serkin_6 13 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03503 445 MobiDBLite consensus disorder prediction 416 445 - -
Vifa2g03503 445 PANTHER CELL DIVISION PROTEIN KINASE 74 147 - -
Vifa2g03503 445 Gene3D Transferase(Phosphotransferase) domain 1 74 146 - -
Vifa2g03503 445 Pfam Protein kinase domain 74 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03503 445 SUPERFAMILY Protein kinase-like (PK-like) 74 145 IPR011009 -
Vifa2g03503 445 ProSiteProfiles Protein kinase domain profile. 1 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03503 Vifa-Chr2 1015634687 1015638420 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03503 74 144 Core Cell Cycle Gene Families AT2G38620 88.732 2.07e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Vifa2g03503 Pkinase 3.9e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03503 K07760 - cam:101488558 250.751