LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g03503	ATGGGAAGAAGGTCCAAAAGCTTCTCCTTTTTTCTCTTCTCGTCGCTGCCCGACATCACCGGCTTCCACCACAACCATGTCTTCTCTTCATTTCAACCTCCATCCACTCCCTCCATCTTCATCTCCACTACTCACCACCACCAACAACATTTCTTCCTTCTCCCCCACTTCCCTCTCCATCTTCTACAACAACCACCACCACCTTCTTCGCTTCAATCTCATCGGGATTTGAAGCCGCAGAATTTGCTTCTCGATCAACAGCAAGGGATTTTGAAGATTGCTGATCTTGGTCTTGGGAGGGCTTTTACCGTCCCGCTTAAGAGTTATACTCATGAGATTGTTACTCTTTGGTATAGAGCTCCTGAAGTTTTGCTTGGATCTACTACCTACTCTACTAGAGTTGATATCTGGTCTGTTGGATGTATCTTTGGTGGATTCGCGGCAGTGATGTGTAGCGGAACTCAAATGGAAATACCCTACAAAACATCAGAAGAATCGTCTGGTTCATCATCATCATTTTCGAACGAATTTGTTGCGATTAAGATGCCATTAACACCGAGTCCAACTCCGACTCACAAGAAGGTGAATTTTCTTGTGACTTCACGTTCTGTTGATGCTGCTCCAATTGTGGATAGTGATAGTAACAATCTAGGGAATTTGACCACAAGAGGAAAATCGTCGAGTGCTAGAAGTATTATGCCGAAATTGAACTTTCCGTATAATAGGACTTCATCATCTGATGTTGAAAAGGCGATAAGTTTGGCTCCGGAAAGTCCTTGTGAGAAGCCTTCTGTCTCTGGATCAGGATCAGTGTCTTTGAGTAAGCTGTTTGCTCCTAAGATTTATAGAACTTCTTCGTTACCGGTTGAAGAAATCGGGCGTGTTAATAATGAGTTTGCTTTTGGTGGATGTCTTGGTGCTTCTCCATATAGAAGCCAGGGATCGATAGCTCGCACTCGTTCAGAGCCGGTAGATAGCAAAGAAAAAATCATAAGGAAAATGGATAAGTTTTTCCGCATTATTCCTTCCACCCCAGGTGCAAAGGAAGTTAAAGAATGGTTAAAAGCTTCTGCAGAAAAGGATACAGTTAAAGAATGGTTAAAAGCTTCTGCAGAAAAGGATACAGTTAATTTGATTAAGGATACTGTTACTCCGGTTAATTTGATTGGTTATGGGTTGGCGTTTTTGGGGGTTGCGTATTATAATCATTCCAAGTTGCAGGCGCTTAAGGCTTCGGAGACGCAGAAGAAGGCTCTTCAGAATGATGAAGAGGCTGGAAGGTTGTTGGAACAGAGAGACGGAGAAGGGACTGGAAGGAAGATTGACAGCCAGAACTGA	1338	0.4335	MGRRSKSFSFFLFSSLPDITGFHHNHVFSSFQPPSTPSIFISTTHHHQQHFFLLPHFPLHLLQQPPPPSSLQSHRDLKPQNLLLDQQQGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTTYSTRVDIWSVGCIFGGFAAVMCSGTQMEIPYKTSEESSGSSSSFSNEFVAIKMPLTPSPTPTHKKVNFLVTSRSVDAAPIVDSDSNNLGNLTTRGKSSSARSIMPKLNFPYNRTSSSDVEKAISLAPESPCEKPSVSGSGSVSLSKLFAPKIYRTSSLPVEEIGRVNNEFAFGGCLGASPYRSQGSIARTRSEPVDSKEKIIRKMDKFFRIIPSTPGAKEVKEWLKASAEKDTVKEWLKASAEKDTVNLIKDTVTPVNLIGYGLAFLGVAYYNHSKLQALKASETQKKALQNDEEAGRLLEQRDGEGTGRKIDSQN	445

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vifa2g03503	445	SMART	serkin_6	13	254	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vifa2g03503	445	MobiDBLite	consensus disorder prediction	416	445	-	-
Vifa2g03503	445	PANTHER	CELL DIVISION PROTEIN KINASE	74	147	-	-
Vifa2g03503	445	Gene3D	Transferase(Phosphotransferase) domain 1	74	146	-	-
Vifa2g03503	445	Pfam	Protein kinase domain	74	143	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vifa2g03503	445	SUPERFAMILY	Protein kinase-like (PK-like)	74	145	IPR011009	-
Vifa2g03503	445	ProSiteProfiles	Protein kinase domain profile.	1	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g03503	Vifa-Chr2	1015634687	1015638420	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g03503	74	144	Core Cell Cycle Gene Families	AT2G38620	88.732	2.07e-38	138

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-Pl	Vifa2g03503		Pkinase	3.9e-22	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g03503	K07760		-	cam:101488558	250.751

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