Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03502 ATGAGGTCCAAAAGCTTCTCCTTTTTTCTCTTCTCGTCGCTGCCCGACATCACCGGCTTCCACCACAACCATGTCTTCTCTTCATTTCAACCTCCATCCACTCCCTCCATCTTCATCTCCACTACTCACCACCACCAACAACATTTCTTCCTTCTCCCCCACTTCCCTCTCCATCTTCTACAACAACCACCACCACCTTCTTCGCTTCAATCTCATCGGGATTTGAAGCCGCAGAATTTGCTTCTCGATCAACAGCAAGGGATTTTGAAGATTGCTGATCTTGGTCTTGGGAGGGCTTTTACCGTCCCGCTTAAGAGTTATACTCATGAGATTGTTACTCTTTGGTATAGAGCTCCTGAAGTTTTGCTTGGATCTACTACCTACTCTACTAGAGTTGATATCTGGTCTGTTGGATGTATCTTTGGTGGATTCGCGGCAGTGATGTGTAGCGGAACTCAAATGGAAATACCCTACAAAACATCAGAAGAATCGTCTGGTTCATCATCATCATTTTCGAACGAATTTGTTGCGATTAAGATGCCATTAACACCGAGTCCAACTCCGACTCACAAGAAGGTGAATTTTCTTGTGACTTCACGTTCTGTTGATGCTGCTCCAATTGTGGATAGTGATAGTAACAATCTAGGGAATTTGACCACAAGAGGAAAATCGTCGAGTGCTAGAAGTATTATGCCGAAATTGAACTTTCCGTATAATAGGACTTCATCATCTGATGTTGAAAAGGCGATAAGTTTGGCTCCGGAAAGTCCTTGTGAGAAGCCTTCTGTCTCTGGATCAGGATCAGTGTCTTTGAGTAAGCTGTTTGCTCCTAAGATTTATAGAACTTCTTCGTTACCGGTTGAAGAAATCGGGCGTGTTAATAATGAGTTTGCTTTTGGTGGATGTCTTGGTGCTTCTCCATATAGAAGCCAGGGATCGATAGCTCGCACTCGTTCAGAGCCGGTAGATAGCAAAGAAAAAATCATAAGGAAAATGGATAAGTTTTTCCGCATTATTCCTTCCACCCCAGGTGCAAAGGAAGTTAAAGAATGGTTAAAAGCTTCTGCAGAAAAGGATACAGTTAAAGAATGGTTAAAAGCTTCTGCAGAAAAGGATACAGTTAATTTGATTAAGGATACTGTTACTCCGGTTAATTTGATTGGTTATGGGTTGGCGTTTTTGGGGGTTGCGTATTATAATCATTCCAAGTTGCAGGCGCTTAAGGCTTCGGAGACGCAGAAGAAGGCTCTTCAGAATGATGAAGAGGCTGGAAGCTTGTCTTTCTCATTTTTGGATGCAAAATTCTGTCTGTTGGATGAGGCGCGTTTTGCTTTTGGGTATATGCGGTGGTGTAATTTACTACTTTTAGGTCTGAGATTGGCGTCTGTGTCTTATATATGCTTATTCAGTGTTTCGTATTAA 1422 0.4248 MRSKSFSFFLFSSLPDITGFHHNHVFSSFQPPSTPSIFISTTHHHQQHFFLLPHFPLHLLQQPPPPSSLQSHRDLKPQNLLLDQQQGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTTYSTRVDIWSVGCIFGGFAAVMCSGTQMEIPYKTSEESSGSSSSFSNEFVAIKMPLTPSPTPTHKKVNFLVTSRSVDAAPIVDSDSNNLGNLTTRGKSSSARSIMPKLNFPYNRTSSSDVEKAISLAPESPCEKPSVSGSGSVSLSKLFAPKIYRTSSLPVEEIGRVNNEFAFGGCLGASPYRSQGSIARTRSEPVDSKEKIIRKMDKFFRIIPSTPGAKEVKEWLKASAEKDTVKEWLKASAEKDTVNLIKDTVTPVNLIGYGLAFLGVAYYNHSKLQALKASETQKKALQNDEEAGSLSFSFLDAKFCLLDEARFAFGYMRWCNLLLLGLRLASVSYICLFSVSY 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03502 473 ProSiteProfiles Protein kinase domain profile. 1 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03502 473 SUPERFAMILY Protein kinase-like (PK-like) 72 143 IPR011009 -
Vifa2g03502 473 PANTHER CELL DIVISION PROTEIN KINASE 72 145 - -
Vifa2g03502 473 Gene3D Transferase(Phosphotransferase) domain 1 72 144 - -
Vifa2g03502 473 SMART serkin_6 11 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03502 473 Pfam Protein kinase domain 72 141 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03502 Vifa-Chr2 1015624613 1015630072 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03502 72 142 Core Cell Cycle Gene Families AT2G38620 88.732 5.11e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Vifa2g03502 Pkinase 4.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03502 K07760 - cam:101488558 250.751