Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03497 ATGTCAGAAAAAAACTCTAAGAAGCTCACCTTCTCCCAAATTGACGCTGTTAATGTCTCTAAACGGTATGATCCAACGACTGTGTTTACTGTGCTTCAGGAATTATCACATTATCCTGCATGGAAGAAATTTGATTGGGATGAATTGGTCAACAAAACCTCATCTGGTATTTCTAATGCCAGAGAGTATCAGATGCTATGGCGTCATTTGGCGTATCGCTATTCCTTGCCTGACGATTTTGATGCGGATGATCCTATGGATGATGACAGTGACCTAGATTATGAGCTGGAACCGTTACCTTCTATAAGTGCGGAATCTACACCAGAGTGTTCAGCATGTGTGAAGGTGATGATAGCTTCCCGCACGCTAAGTGAAGCTACCCCTAGTAGCTCAACAATTGAGGCTCCATTGACTGTAAATTTTCCAGTTTGCCATTCATTTAGAACTCCAAGGGAAATTTCACAGCCCTCTAATTTGATGGAACAGACAAGCATTACGTTTCCTGTTACTGTTCAGAGACAGACACTTCCAACTGTATCATCTTCAGATGCTTTAGATACCAAAGGAACAGTTGGTGGTACCCTGGCTTCCAAAAGGAAAAGAAAAGGATGGTCAGAGGAAGAGGACAATCAGCTACGGGCTGCTGTTCAGAAATGGGGTGAAGGGAATTGGGCAAACATAGCAAAAGGCGACAGCTTTCCTATTAAGAGAAGTGCAACACAATTGTCACAGAGGTGGAGCGCTTTACGAAAGAAAGACGGCAGTGGCACTTCAGGAACCATCAATTCAGGAACCACTGTGACCACTAACACACAGTATACTGCTGAACAGTTGGCAACTCGTCACTCCTTAAATTTAGCCCTTGACATGCCATTCAAAAAGTTAACTGCTCCTGGAATGACTGATCCTGGTAGGACATCCATGTCAATTAATAATCAAGTCCAGTCTCGTAATATGACACAAGTCTCCTCAGTTCGTAGTTCTGTACCGCTTCAGCGTCCATCTCAACAAGCTTGTGGTTCCTCAGCAAAACCCACAGTAACCTCTGAAAATCCAGTACCGAATGCTGCAATTTCAGCTCGCGGGTTAAAACCGGCTATTATTCACTCTGGGGCACAAACTGTTTCTCGACCAAATTCAGTACCAAATGCTGCAATTTCAGCTCGCGAGATCAAACCTGCCATTATTCACTCTGGAGCACAAACTGTTTCACGACCAAATGCAGTACCAAATGCTGCAATTTCAGCTCGCGAGATAAAATCTGCCATTATTCACTCTGGAGCACAAACCGTTTCACGATCAAATGCAGTACCAAATGCTGCAATTTCAGGTCGTGAGTTAAAACCTGCCATTATTCACTCTGGAGCACAAACTGTTTCACGATCAAATGCAGTACCAAATGCTGCAATTTCAGGCCGTGAGTTAAAACCTGCCATTATTCACTCTGGAGCACAAACTGTTTCACGATCAAATGCAGTACCAAATGCTGCAATTTCAGGTCGCGAGTTAAAACCTACCATTATTCACTCTGGAGCTCAAACTGTTTCACGATCAAATGCAGTAGTACCAGATGCTGCAATTTCAGGTCGCGAATTAAAACCTGCCATTGTTCACTCTGGAGCACAAACTGTTTCCCGATCAAATACAGTACCAAATGCTGCAATTTTGGCCCGCGTGTTAAAACCTGCCATTGCTCACTCTGGAGCACAAACTATATCTCGATCAAATGCAGTACCAAATGCTTCACCACAATTAAAGGTTTCTCTACCGAAAAATGTGGTACATCCGGTGCCTGCTGGTAGTTCTATGGCAAAGACATCCATTTCTGCTGCTTTGCCTTCTAACCAAAAGGATAAACATGTTACCGCCGTGAAAGAACAGGAAAAAAGAGTTTCTGATCCTGGCTCCACACCCAAAGAGAAGGCGATAGAGAAAAATGTGGCACACACAGTGCCTGCTGGTAGTTCTTTGACAAGGACATCCATTTCTGCTGGTTTGCCTTCTGACCAAAAGGATAAACTTGTAACCTCTGTGAAAGAACCAGAAAAAAGAGTTTCTACATTAACTCAGAACCATGTAGATAACAAACAGGATAAGGTGGGGCTGGATTTAGCTAAAGCCAAAAGCATGCCTAGCGAGAAAGTTTTGGAACGTAAAGTAGTATCACAAAATCCAGGGGGGCCCTGA 2187 0.4353 MSEKNSKKLTFSQIDAVNVSKRYDPTTVFTVLQELSHYPAWKKFDWDELVNKTSSGISNAREYQMLWRHLAYRYSLPDDFDADDPMDDDSDLDYELEPLPSISAESTPECSACVKVMIASRTLSEATPSSSTIEAPLTVNFPVCHSFRTPREISQPSNLMEQTSITFPVTVQRQTLPTVSSSDALDTKGTVGGTLASKRKRKGWSEEEDNQLRAAVQKWGEGNWANIAKGDSFPIKRSATQLSQRWSALRKKDGSGTSGTINSGTTVTTNTQYTAEQLATRHSLNLALDMPFKKLTAPGMTDPGRTSMSINNQVQSRNMTQVSSVRSSVPLQRPSQQACGSSAKPTVTSENPVPNAAISARGLKPAIIHSGAQTVSRPNSVPNAAISAREIKPAIIHSGAQTVSRPNAVPNAAISAREIKSAIIHSGAQTVSRSNAVPNAAISGRELKPAIIHSGAQTVSRSNAVPNAAISGRELKPAIIHSGAQTVSRSNAVPNAAISGRELKPTIIHSGAQTVSRSNAVVPDAAISGRELKPAIVHSGAQTVSRSNTVPNAAILARVLKPAIAHSGAQTISRSNAVPNASPQLKVSLPKNVVHPVPAGSSMAKTSISAALPSNQKDKHVTAVKEQEKRVSDPGSTPKEKAIEKNVAHTVPAGSSLTRTSISAGLPSDQKDKLVTSVKEPEKRVSTLTQNHVDNKQDKVGLDLAKAKSMPSEKVLERKVVSQNPGGP 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03497 728 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 196 254 IPR017930 -
Vifa2g03497 728 Gene3D - 194 255 - -
Vifa2g03497 728 ProSiteProfiles Myb-like domain profile. 196 250 IPR001005 -
Vifa2g03497 728 MobiDBLite consensus disorder prediction 328 352 - -
Vifa2g03497 728 MobiDBLite consensus disorder prediction 673 689 - -
Vifa2g03497 728 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 446 - -
Vifa2g03497 728 MobiDBLite consensus disorder prediction 651 667 - -
Vifa2g03497 728 SMART sant 200 252 IPR001005 -
Vifa2g03497 728 Pfam Myb-like DNA-binding domain 201 246 IPR001005 -
Vifa2g03497 728 MobiDBLite consensus disorder prediction 181 203 - -
Vifa2g03497 728 MobiDBLite consensus disorder prediction 612 728 - -
Vifa2g03497 728 MobiDBLite consensus disorder prediction 619 646 - -
Vifa2g03497 728 SUPERFAMILY Homeodomain-like 199 251 IPR009057 -
Vifa2g03497 728 CDD SANT_TRF 204 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03497 Vifa-Chr2 1014274135 1014283158 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa2g03497 Myb_DNA-binding 6.9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03497 - - tpra:123913998 606.29