Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03496 ATGTCAGAAAAAAACTCTAAGAAGCTCACCTTCTCCCAAATTGACGCTGTTAATGTCTCTAAACGGTATGATCCAACGACTGTGTTTACTGTGCTTCAGGAATTATCACATTATCCTGCATGGAAGAAATTTGATTGGGATGAATTGGTCAACAAAACCTCATCTGGTATTTCTAATGCCAGAGAGTATCAGATGCTATGGCGTCATTTGGCGTATCGCTATTCCTTGCCTGACGATTTTGATGCGGATGATCCTATGGATGATGACAGTGACCTAGATTATGAGCTGGAACCGTTACCTTCTATAAGTGCGGAATCTACACCAGAGTGTTCAGCATGTGTGAAGGTGATGATAGCTTCCCGCACGCTAAGTGAAGCTACCCCTAGTAGCTCAACAATTGAGGCTCCATTGACTGTAAATTTTCCAGTTTGCCATTCATTTAGAACTCCAAGGGAAATTTCACAGCCCTCTAATTTGATGGAACAGACAAGCATTACGTTTCCTGTTACTGTTCAGAGACAGACACTTCCAACTGTATCATCTTCAGATGCTTTAGATACCAAAGGAACAGTTGGTGGTACCCTGGCTTCCAAAAGGAAAAGAAAAGGATGGTCAGAGGAAGAGGACAATCAGCTACGGGCTGCTGTTCAGAAATGGGGTGAAGGGAATTGGGCAAACATAGCAAAAGGCGACAGCTTTCCTATTAAGAGAAGTGCAACACAATTGTCACAGAGGTGGAGCGCTTTACGAAAGAAAGACGGCAGTGGCACTTCAGGAACCATCAATTCAGGAACCACTGTGACCACTAACACACAGTATACTGCTGAACAGTTGGCAACTCGTCACTCCTTAAATTTAGCCCTTGACATGCCATTCAAAAAGTTAACTGCTCCTGGAATGACTGATCCTGGTAGGACATCCATGTCAATTAATAATCAAGTCCAGTCTCGTAATATGACACAAGTCTCCTCAGTTCGTAGTTCTGTACCGCTTCAGCGTCCATCTCAACAAGCTTGTGGTTCCTCAGCAAAACCCACAGTAACCTCTGAAAATCCAGTACCGAATGCTGCAATTTCAGCTCGCGGGTTAAAACCGGCTATTATTCACTCTGGGGCACAAACTGTTTCTCGACCAAATTCAGTACCAAATGCTGCAATTTCAGCTCGCGAGATCAAACCTGCCATTATTCACTCTGGAGCACAAACTGTTTCACGACCAAATGCAGTACCAAATGCTGCAATTTCAGCTCGCGAGATAAAATCTGCCATTATTCACTCTGGAGCACAAACCGTTTCACGATCAAATGCAGTACCAAATGCTGCAATTTCAGGTCGTGAGTTAAAACCTGCCATTATTCACTCTGGAGCACAAACTGTTTCACGATCAAATGCAGTACCAAATGCTGCAATTTCAGGCCGTGAGTTAAAACCTGCCATTATTCACTCTGGAGCACAAACTGTTTCACGATCAAATGCAGTACCAAATGCTGCAATTTCAGGTCGCGAGTTAAAACCTACCATTATTCACTCTGGAGCTCAAACTGTTTCACGATCAAATGCAGTAGTACCAGATGCTGCAATTTCAGGTCGCGAATTAAAACCTGCCATTGTTCACTCTGGAGCACAAACTGTTTCCCGATCAAATACAGTACCAAATGCTGCAATTTTGGCCCGCGTGTTAAAACCTGCCATTGCTCACTCTGGAGCACAAACTATATCTCGATCAAATGCAGTACCAAATGCTTCACCACAATTAAAGGTTTCTCTACCGAAAAATGTGGTACATCCGGTGCCTGCTGGTAGTTCTATGGCAAAGACATCCATTTCTGCTGCTTTGCCTTCTAACCAAAAGTCTCAACAGGATAAACATGTTACCGCCGTGAAAGAACAGGAAAAAAGAGTTTCTGATCCTGGCTCCACACCCAAAGAGAAGGCGATAGAGAAAAATGTGGCACACACAGTGCCTGCTGGTAGTTCTTTGACAAGGACATCCATTTCTGCTGGTTTGCCTTCTGACCAAAAGGATAAACTTGTAACCTCTGTGAAAGAACCAGAAAAAAGAGTTTCTACATTAACTCAGAACCATGTAGATAACAAACAGGATAAGGTGGGGCTGGATTTAGCTAAAGCCAAAAGCATGCCTAGCGAGAAAGTTTTGGAACGTAAAGTAGTATCACAAAATCCAGGGGGGCCCTGA 2196 0.4353 MSEKNSKKLTFSQIDAVNVSKRYDPTTVFTVLQELSHYPAWKKFDWDELVNKTSSGISNAREYQMLWRHLAYRYSLPDDFDADDPMDDDSDLDYELEPLPSISAESTPECSACVKVMIASRTLSEATPSSSTIEAPLTVNFPVCHSFRTPREISQPSNLMEQTSITFPVTVQRQTLPTVSSSDALDTKGTVGGTLASKRKRKGWSEEEDNQLRAAVQKWGEGNWANIAKGDSFPIKRSATQLSQRWSALRKKDGSGTSGTINSGTTVTTNTQYTAEQLATRHSLNLALDMPFKKLTAPGMTDPGRTSMSINNQVQSRNMTQVSSVRSSVPLQRPSQQACGSSAKPTVTSENPVPNAAISARGLKPAIIHSGAQTVSRPNSVPNAAISAREIKPAIIHSGAQTVSRPNAVPNAAISAREIKSAIIHSGAQTVSRSNAVPNAAISGRELKPAIIHSGAQTVSRSNAVPNAAISGRELKPAIIHSGAQTVSRSNAVPNAAISGRELKPTIIHSGAQTVSRSNAVVPDAAISGRELKPAIVHSGAQTVSRSNTVPNAAILARVLKPAIAHSGAQTISRSNAVPNASPQLKVSLPKNVVHPVPAGSSMAKTSISAALPSNQKSQQDKHVTAVKEQEKRVSDPGSTPKEKAIEKNVAHTVPAGSSLTRTSISAGLPSDQKDKLVTSVKEPEKRVSTLTQNHVDNKQDKVGLDLAKAKSMPSEKVLERKVVSQNPGGP 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03496 731 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 196 254 IPR017930 -
Vifa2g03496 731 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 496 - -
Vifa2g03496 731 Gene3D - 194 255 - -
Vifa2g03496 731 ProSiteProfiles Myb-like domain profile. 196 250 IPR001005 -
Vifa2g03496 731 MobiDBLite consensus disorder prediction 328 352 - -
Vifa2g03496 731 SMART sant 200 252 IPR001005 -
Vifa2g03496 731 MobiDBLite consensus disorder prediction 710 731 - -
Vifa2g03496 731 MobiDBLite consensus disorder prediction 654 670 - -
Vifa2g03496 731 MobiDBLite consensus disorder prediction 181 208 - -
Vifa2g03496 731 MobiDBLite consensus disorder prediction 610 688 - -
Vifa2g03496 731 SUPERFAMILY Homeodomain-like 199 251 IPR009057 -
Vifa2g03496 731 MobiDBLite consensus disorder prediction 622 649 - -
Vifa2g03496 731 CDD SANT_TRF 204 251 - -
Vifa2g03496 731 Pfam Myb-like DNA-binding domain 201 246 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03496 Vifa-Chr2 1014274135 1014283158 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa2g03496 Myb_DNA-binding 7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03496 - - tpra:123913998 605.134