Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03486 ATGCCTCATAGAGCAACTTACATTTTCCCGCGTCATTTTCCAGAGCGAGGATTCGATGAATCATCTAAAAAGCTATTAGATCACGATAAGGGCAAAATCGTCAATTCAATCAAATCTGTAACCGAAAGCGACATTCAAAGCAGTAACCAACTTTCGTCGTTTACTCCTCCATCAACTAAACACGACGTCGTTTTCTCCTCCGGCAAATTCTCTAACTCCGATAAACTCCGAATCAAACAAAAGCAGATAGCGGCTTTCTGTGACTGGTTCATCGACAAGAAAAGAAATCACTCCGGTTACCAGACTCACCATCTCCGCCGCCGCTCGTCGATCTCCGATGATGATCATGATCACGACTTTCTTCTTCATCATCCGGAGAAAGACATTGCAATCGACCGGAATTTTGATCGCCAGGTTTCGCTTCCGAGGCTATCGAGTGATAGTAGTTATGCAGGGAGCTTGTTTTCCAGTGACATTAAGGAGGAAACACCGTTGTCTCAAGTCTCCACCGTTACCACCACCACGGTGAGGAGGCAGAAGGATGAAGATGAAAAAAAAGAGGTGTTTGCTAAGGAGTGTAATGAAAGCTACATCTTGCAGCTTAAGTTAGCAAAGAGGCTAACTTGTTTGGCAAGTCTCGTAACGGAACCTGTTCTTACTCATGGCACTGAAACTTGGGATGCTAAATCTGTTTCTTATCGTCTTTGGGTGAGTGGGTGCTTGTCATACACAGACAAGATAAGTGATGGTTTTTACAACATATTGGGGATGAATCCGTATCTTTGGGTGACGTGCAATGACGAGGAGGAAGGTAAGAAGGTACCTAGTTTGTTGGCGCTTAAAGCGGTTGAACCAAGCGAGACGTCTATGGAGGTGGTGCTTGTCGATAGGCACCTAGATTCTCACTTGAAGATGCTTCATGATAAAGCTCAGGAGTTGTATTGTTCTTCAGAGAACACACTGGTGTTTGTTGAACAGCTTGGAAAACTTGTTGCCATATATATGGGGGGTATATTCCCAGTGGAGCAAGGAGATCTCCACAAGAGGTGGAGGTTGGTTAGTAAGAGGCAGAAGAATTTTCACAAGTGTGCTGTGCTTCCCATTGGCAGTTTATCTTCTGGGCTTTGTAGGCATCGAGCAATTCTCTTCAAGAGATTGGCTGATTACATAGGGTTGCCTTGTCGCATAGCTCGTGGTTGCAAGTATTGTGCTGCAGATCACAGATCTTCTTGCCTAGTCAAGATTAAAGATGAGAAGCAGCTCTCAAGGGAATATGTTGTCGACCTAGTTGGGGAACCAGGAAATGTCCACGGCCCAGATTCCTCCATTAATGGAGCATATGTTTCTTCGATTCCTTCTCTGTTTCAAATTTCTCATTTTAAGGAATTACAATCACCATATAACGATGATGAAGCAAGTTCTCAACCACCTATTAGTTTCAACCAAAGTTCTTGTATTCCTGAAACTCATCCTTATTCGGGTTGTGGACAGATCGATCAACAAGTTAAAGAAACGGATTTGTTGAAAGTTCACCAGGGCTCCATATGTGCTTCAGCTGATCAACCCTGTGAAGGAACCAACCCACTTCTAATTCCTTTTGGTTTAAAAGAGAATGATGAGGAATGTGCAGTTCTAGGTTCAATTTTGCCTACCATTCACGAGGATGTTTCCAAAGTTTTTCCTCCCACCAGAACATCATTACATGAATATCCAAGGCTTAGTGAAGAGGCAGTTGTATTAGAAGAAAATTCCAGCAATGAAATCATCGTAACCGGATGTTCTGTGGTAAAAAGTACTTTCAAGCAATGTATACTTAGTTCCTCATGCCAACCAGAACTGAAGCCGTTGGACGATAACATTGAAAACCAAGACTATGTACCAGCTGGGAGTATTCCAAGATATGTGAATCTTGAACCATCATTGGCAATGGACTGGCTTGAGATATCATGGGATGATTTACGTATTAAAGAGCGTGTTGGTGCTGGCTCGTTTGGAACTGTGCACCGCGCTGAATGGCATGGATCAGATGTTGCAGTCAAGGTTTTAACAGATCAGGATTTTCATGATGATCACTTGAAGGAGTTTCTGAGAGAGGTTGCAATAATGAAACGTGTTCGCCATCCAAACGTGGTGCTTTTCATGGGTGCAGTTACAACACGCCCCAATCTATCAATAGTGACAGAGTATTTGCCTAGGGGTAGTTTATACCGCCTCATACATAGGCCAGCATCTGGTGAACTTCTGGATAGTAGGAGAAGATTACGAATGGCTTTGGATGTGGCTAAAGGAATCAATTATCTCCATTGTCTTAAACCTCCAATCCTGCACTGGGATCTGAAATCCCCAAACTTGTTAGTGGACAAAAATTGGACTGTGAAGGTTTGTGATTTTGGATTGTCCAGATTTAAGGCAAACACTTTCATACCCTCAAAGTCGGTTGCCGGAACACCTGAGTGGATGGCCCCTGAATTTCTTCGCGGAGAACCTTCAGATGAGAAATCTGACATATACAGTTTTGGAGTTATCCTGTGGGAGCTTGTGACCATGCAACAACCATGGAGTGGACTTAGCCCTCCCCAGGTGGTTGGAGCTGTTGCTTTCCAGAATAGGAAGCTTGCTATCCCTCCAAACATCTCCCCAGTGTTTGCCTCCCTAATGGAATCTTGTTGGGCTGATGACCCTGCTCAGCGCCCATCTTTTGGTGGCATAATTGATACACTAAAGAAGCTGCTGAAGTCTCCAACAGAGATGATAAAGATGGGTGATAGGCGCAACCCATAA 2781 0.4383 MPHRATYIFPRHFPERGFDESSKKLLDHDKGKIVNSIKSVTESDIQSSNQLSSFTPPSTKHDVVFSSGKFSNSDKLRIKQKQIAAFCDWFIDKKRNHSGYQTHHLRRRSSISDDDHDHDFLLHHPEKDIAIDRNFDRQVSLPRLSSDSSYAGSLFSSDIKEETPLSQVSTVTTTTVRRQKDEDEKKEVFAKECNESYILQLKLAKRLTCLASLVTEPVLTHGTETWDAKSVSYRLWVSGCLSYTDKISDGFYNILGMNPYLWVTCNDEEEGKKVPSLLALKAVEPSETSMEVVLVDRHLDSHLKMLHDKAQELYCSSENTLVFVEQLGKLVAIYMGGIFPVEQGDLHKRWRLVSKRQKNFHKCAVLPIGSLSSGLCRHRAILFKRLADYIGLPCRIARGCKYCAADHRSSCLVKIKDEKQLSREYVVDLVGEPGNVHGPDSSINGAYVSSIPSLFQISHFKELQSPYNDDEASSQPPISFNQSSCIPETHPYSGCGQIDQQVKETDLLKVHQGSICASADQPCEGTNPLLIPFGLKENDEECAVLGSILPTIHEDVSKVFPPTRTSLHEYPRLSEEAVVLEENSSNEIIVTGCSVVKSTFKQCILSSSCQPELKPLDDNIENQDYVPAGSIPRYVNLEPSLAMDWLEISWDDLRIKERVGAGSFGTVHRAEWHGSDVAVKVLTDQDFHDDHLKEFLREVAIMKRVRHPNVVLFMGAVTTRPNLSIVTEYLPRGSLYRLIHRPASGELLDSRRRLRMALDVAKGINYLHCLKPPILHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFIPSKSVAGTPEWMAPEFLRGEPSDEKSDIYSFGVILWELVTMQQPWSGLSPPQVVGAVAFQNRKLAIPPNISPVFASLMESCWADDPAQRPSFGGIIDTLKKLLKSPTEMIKMGDRRNP 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03486 926 ProSiteProfiles Protein kinase domain profile. 653 911 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03486 926 ProSitePatterns Serine/Threonine protein kinases active-site signature. 774 786 IPR008271 GO:0004672|GO:0006468
Vifa2g03486 926 FunFam Serine/threonine-protein kinase CTR1 732 917 - -
Vifa2g03486 926 Gene3D Transferase(Phosphotransferase) domain 1 732 920 - -
Vifa2g03486 926 PRINTS Tyrosine kinase catalytic domain signature 878 900 IPR001245 GO:0004672|GO:0006468
Vifa2g03486 926 PRINTS Tyrosine kinase catalytic domain signature 834 856 IPR001245 GO:0004672|GO:0006468
Vifa2g03486 926 PRINTS Tyrosine kinase catalytic domain signature 768 786 IPR001245 GO:0004672|GO:0006468
Vifa2g03486 926 PRINTS Tyrosine kinase catalytic domain signature 727 740 IPR001245 GO:0004672|GO:0006468
Vifa2g03486 926 FunFam Serine/threonine-protein kinase isoform 1 643 731 - -
Vifa2g03486 926 Pfam Protein tyrosine and serine/threonine kinase 653 907 IPR001245 GO:0004672|GO:0006468
Vifa2g03486 926 Gene3D Phosphorylase Kinase; domain 1 646 730 - -
Vifa2g03486 926 Pfam Ethylene-responsive protein kinase Le-CTR1 228 436 - -
Vifa2g03486 926 SMART serkin_6 653 911 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03486 926 ProSitePatterns Protein kinases ATP-binding region signature. 659 680 IPR017441 GO:0005524
Vifa2g03486 926 CDD STKc_MAP3K-like 659 907 - -
Vifa2g03486 926 SUPERFAMILY Protein kinase-like (PK-like) 629 906 IPR011009 -
Vifa2g03486 926 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 179 912 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03486 Vifa-Chr2 1009528949 1009535166 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03486 1 921 MAP Kinase Kinase Kinase AT4G24480 56.110 0.0 1015
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vifa2g03486 PK_Tyr_Ser-Thr 3.3e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03486 - - gmx:100808435 1372.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00729 1 119758820 119762439 Vifa2g03486 2 1009528949 1009535166 PCT