Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03483 ATGTACAACTCCATCAACATGTCCGACCAGATCAAGAACAACGAAGACGCTGAAAATCACATCCATTACGATTCACACACCCTCGAAGACGGTTCCGGCGATGGGGAAGGAGCAATCCAAGATGTTTCCATCGATGACGTTTATGTTTCCGGTGACGGAAACCACGCTGACATGTCAATTCAACGATTCGATGATTCTAGCCAGCTCACGCTCTCGTTCCGTGGTCAAGTGTATGTCTTCGACTCAGTTACCCCTGAAAAGGTTCAATCGGTTTTGTTACTGTTAGGAGGATGTGAACTATCATCGGGTTCCCAATGTTTGGACACATCGCCCATAAATCAGAGAAGTGGTACTGAATTTCCTACAAGGTGTAGTCAGCCACAGCGAGCAGCCTCTTTGATTAGGTTTCGTCAGAAAAGGAAAGAGCGAAACTTTGATAAGAAAGTTAGATATGAAGTGCGTCAAGAAGTTGCACTAAGGATGCAGCGTAGTAAGGGCCAATTTACATCAGCTAAGAAACAAGATGGAGCTAATAACTGGGGATCTGATCCAGAGTCAGGGCAAGATATGGTTCAATCCGATACCGCATGCACACACTGTGGAATCAGTTCAAGATCCACCCCTATGATGCGAAGGGGGCCATCTGGGCCAAGGACACTTTGCAATGCTTGTGGGCTTTTTTGGGCAAATAGAGGTACTTTGAGGGATCTATCTACTTCTAGGAGAAACCACGAACATCACACTCTTCCGCCACCTGAGCAGGGTACTTTGAGGGACCTTTCTAATTCTAAGAGAAACCACGAACCCCACCCTATTCCACCACCTGAGCAGGTCGGCGAGGTTAATGACTTGAACTGTGAGACTGCTCTTCCTGCGCATAACGATTCTGTTGATGATAAAACAGCTTTGACATCCGATCAATGA 924 0.4643 MYNSINMSDQIKNNEDAENHIHYDSHTLEDGSGDGEGAIQDVSIDDVYVSGDGNHADMSIQRFDDSSQLTLSFRGQVYVFDSVTPEKVQSVLLLLGGCELSSGSQCLDTSPINQRSGTEFPTRCSQPQRAASLIRFRQKRKERNFDKKVRYEVRQEVALRMQRSKGQFTSAKKQDGANNWGSDPESGQDMVQSDTACTHCGISSRSTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSTSRRNHEHHTLPPPEQGTLRDLSNSKRNHEPHPIPPPEQVGEVNDLNCETALPAHNDSVDDKTALTSDQ 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03483 307 Pfam CCT motif 129 171 IPR010402 GO:0005515
Vifa2g03483 307 PANTHER GATA TRANSCRIPTION FACTOR 28 13 291 IPR045280 GO:0006355
Vifa2g03483 307 ProSiteProfiles Tify domain profile. 62 97 IPR010399 -
Vifa2g03483 307 MobiDBLite consensus disorder prediction 164 192 - -
Vifa2g03483 307 ProSitePatterns GATA-type zinc finger domain. 197 224 IPR000679 GO:0006355|GO:0043565
Vifa2g03483 307 Gene3D - 188 248 IPR013088 GO:0006355|GO:0008270
Vifa2g03483 307 ProSiteProfiles GATA-type zinc finger domain profile. 191 247 IPR000679 GO:0006355|GO:0043565
Vifa2g03483 307 Pfam GATA zinc finger 197 233 IPR000679 GO:0006355|GO:0043565
Vifa2g03483 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 249 - -
Vifa2g03483 307 CDD ZnF_GATA 196 238 IPR000679 GO:0006355|GO:0043565
Vifa2g03483 307 Pfam tify domain 66 96 IPR010399 -
Vifa2g03483 307 SMART GATA_3 191 244 IPR000679 GO:0006355|GO:0043565
Vifa2g03483 307 SMART tify_2 62 97 IPR010399 -
Vifa2g03483 307 MobiDBLite consensus disorder prediction 239 307 - -
Vifa2g03483 307 ProSiteProfiles CCT domain profile. 129 171 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03483 Vifa-Chr2 1007780088 1007784247 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03483 66 305 Tify Gene Family AT4G24470 52.479 3.65e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa2g03483 CCT 9.7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03483 - - lja:Lj0g3v0164269.1 347.436