Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03482 ATGGCGGAACAACCTCTCCCGTTCGAGGATCACGCAATTCCGGTTGTCGACGACGACGACGACTACACCGGCGGCGATGATACCATGGATGAATTGGAGGACGAGACGCTCGTCAATTCAGTGAACGCTTCAGCTACTGCGAATCACAACGGCGTCGTTTTGCCTGTAACCCGTACTGGTGAGCTCACTCTTTCTTTCGAGGGTGAGGTTTACGTCTTTCCCGCTGTCACACCTCAGAAGGTTCAAGCTGTTTTGCTGCTTTTGGGAGGTCGCGATGCGCCGCCAGGCATGACTACTGATGAACTTCCGTTTGATCAAAGTTATAGGGGCATGAGTGATATTACAAGGCGTCCAAATCTTTCACGAAGGATAGCCTCCTTGGTCAGGTTCCGTGAAAAACGCAAGGAAAGATGTTTTGACAAGAAAATTAGATACACTGTGAGAAAAGAGGTGGCAGAAAGGATGCATCGAGAGAAGGGACAGTTTGCATCCGTGAAGCCAAGCCCTGGTTCCTCTAATTGGTATTCTGCACAGGGTGCTGGTCAAGATGGCACTCCTAATCCTGAAACTCTGCGTAGATGTAAACATTGTGGAGTCGATGAAAACAGTACTCCTGCAATGCGTCGCGGCCCAGATGGACCAAGAACTTTATGTAATGCATGCGGGCTCATGTGGGCCAACAAGGGAACACTCAGAGATCTCAGTAAGGGTGGAAGGAGTCTTTCTGTTGCGCAAAGTGGTCTGGATCGTCCTGTTGATGTCAAGCCTACTGTTCTTGAAGGGGAATTGTCTGTCATCAGAAATGAACAAGGTATTTCTGAAGATCATCCTTCCAAGGCCATTGCTGCTGAAGGTTTGAATAATGATGCATTTAATCCAAGTGATGAGGAATTACCTGTATCTGTAGAAGACTTAGCAAGCACACTGCCGTCGGTGATAGATCATTCTTCGGAAAATGATGATGAGCAGGAACCCCTGGTTGAACTTTCTAATCCTTCAGATACAGGAATGTCTAATCCTTCAGATACAGATATTGACATTCCTGGAAACTTTGATTAG 1059 0.4721 MAEQPLPFEDHAIPVVDDDDDYTGGDDTMDELEDETLVNSVNASATANHNGVVLPVTRTGELTLSFEGEVYVFPAVTPQKVQAVLLLLGGRDAPPGMTTDELPFDQSYRGMSDITRRPNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAERMHREKGQFASVKPSPGSSNWYSAQGAGQDGTPNPETLRRCKHCGVDENSTPAMRRGPDGPRTLCNACGLMWANKGTLRDLSKGGRSLSVAQSGLDRPVDVKPTVLEGELSVIRNEQGISEDHPSKAIAAEGLNNDAFNPSDEELPVSVEDLASTLPSVIDHSSENDDEQEPLVELSNPSDTGMSNPSDTDIDIPGNFD 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03482 352 ProSiteProfiles Tify domain profile. 55 90 IPR010399 -
Vifa2g03482 352 SMART GATA_3 188 241 IPR000679 GO:0006355|GO:0043565
Vifa2g03482 352 ProSitePatterns GATA-type zinc finger domain. 194 221 IPR000679 GO:0006355|GO:0043565
Vifa2g03482 352 MobiDBLite consensus disorder prediction 328 345 - -
Vifa2g03482 352 Pfam GATA zinc finger 194 230 IPR000679 GO:0006355|GO:0043565
Vifa2g03482 352 PANTHER GATA TRANSCRIPTION FACTOR 28 18 338 IPR045280 GO:0006355
Vifa2g03482 352 MobiDBLite consensus disorder prediction 159 189 - -
Vifa2g03482 352 ProSiteProfiles CCT domain profile. 123 165 IPR010402 GO:0005515
Vifa2g03482 352 SMART tify_2 55 90 IPR010399 -
Vifa2g03482 352 CDD ZnF_GATA 193 240 IPR000679 GO:0006355|GO:0043565
Vifa2g03482 352 Gene3D - 187 257 IPR013088 GO:0006355|GO:0008270
Vifa2g03482 352 MobiDBLite consensus disorder prediction 1 26 - -
Vifa2g03482 352 Pfam tify domain 61 89 IPR010399 -
Vifa2g03482 352 Pfam CCT motif 123 165 IPR010402 GO:0005515
Vifa2g03482 352 ProSiteProfiles GATA-type zinc finger domain profile. 188 245 IPR000679 GO:0006355|GO:0043565
Vifa2g03482 352 MobiDBLite consensus disorder prediction 287 352 - -
Vifa2g03482 352 MobiDBLite consensus disorder prediction 165 185 - -
Vifa2g03482 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 187 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03482 Vifa-Chr2 1006978113 1006983804 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03482 6 236 Tify Gene Family AT1G51600 50.000 1.53e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa2g03482 CCT 3.2e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03482 - - gmx:100801328 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03482 2 1006978113 1006983804 Vifa2g03482 2 1006978113 1006983804 ECH