Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03473 ATGAGGAAGAAAAGGAAAGGAAGTGAAACTGATGCAAATACGAATCTGGGTGATGTTGTTTTGCCTTTGGATCGTGGTTCTGGTTCTGTTGAGTCGTCCAATTTGAAGTCGCATTATTCGTTGGAAGATTGTTGTAGGTTGAAGAAAAGGTGTAAAGAAGATGCTGGTACTGAGACTGCTGGATCTTTTAAGAGTAGGCTTGCTGGCATTGCGACTGCGCCGCCATTTGGGACGTCGTCTTTGCTTACTCCTAGTAGAGGTTTAAAGAGGAAGATAGGTTGTATTGATGTTGCTACTCAGATGGGAAGGAAGAAGAAGATTGAGGATGATTATGTTAATGGTGAATCGATTGGGCAAGGGAAGTTTGGATCTGTTTATTTGTGTTGGTCTAGGGCTAGTGGAGCGGAATATGCGTGTAAGACTTTGAGCAAGGGAGAGGAGACGGTTCATCGAGAGGTTGAGATAATGCAGCATTTGTCGGGGCATTCTGGGGTTGTGACACTGCAAGCAGTTTATGAAGAAGAGGAATCGTTTCATCTTGTGATGGAATTGTGCTCTGGGGGGCGGTTGATTGATCAAATGGTTAAGGATGGACCTTATTCAGAACAGCGAGCTGCTAACATACTAAAGGAAGTGATGTTAGTCATCAAGTATTGTCATGACATGGGAGTTGTGCACAGAGATATCAAACCTGAGAATATTCTGCTCACAAAATCAGGAAAATTAAAGCTTGCGGATTTTGGACTGGCCATGAGAATTTCTGAAGGTCAAAACTTGACTGGATTGGCTGGAAGCCCTGCATATGTTGCCCCCGAAGTATTGTCAGGCAAGTACTCTGAGAAGGTTGATATATGGAGTGCTGGAGTGCTCCTGCATGCTCTGTTGATTGGCTGCCTTCCATTTCAGGGAGATTCATTGGAAGCTGTTTTTGAGGCTATTAAGACTGTCAAATTAGATTTCCAAGCAGGGATGTGGGAATCAATATCTAAACCTGCACGAGATCTTATTGGGAGAATGCTGTCAAGGGATACCTCGACCAGGATATCAGCTGATGAAGTACTTAGGCATCCTTGGATTTTGTTCTACACTGCCCAATCTTTGACGATGCTGCCCATCAAAGCAAAATCAAAAAATCAAACTGGTGGCGCATGCAGACGGCTTATCCCCGCACCAGAACCTAGGTTAGGAGGAAACATGACAGATAATGGCTCACTTAGCGAGCTTTTAACCTCTGAAAGTTGCAATTCAGATGATCAGGATGACTGTGCGTTAATTGATGCACTTGCCACTGCAATTTCCCATGTGAGGATATCTGAACCAAAGAGGAGCAGGTTGTGTAGTCCCACCGGCCCCATAGTTCAGCAAGGTTCATCTAACATGAAGGCTAACAACCTTTGTAAAGCATTTTGA 1410 0.4411 MRKKRKGSETDANTNLGDVVLPLDRGSGSVESSNLKSHYSLEDCCRLKKRCKEDAGTETAGSFKSRLAGIATAPPFGTSSLLTPSRGLKRKIGCIDVATQMGRKKKIEDDYVNGESIGQGKFGSVYLCWSRASGAEYACKTLSKGEETVHREVEIMQHLSGHSGVVTLQAVYEEEESFHLVMELCSGGRLIDQMVKDGPYSEQRAANILKEVMLVIKYCHDMGVVHRDIKPENILLTKSGKLKLADFGLAMRISEGQNLTGLAGSPAYVAPEVLSGKYSEKVDIWSAGVLLHALLIGCLPFQGDSLEAVFEAIKTVKLDFQAGMWESISKPARDLIGRMLSRDTSTRISADEVLRHPWILFYTAQSLTMLPIKAKSKNQTGGACRRLIPAPEPRLGGNMTDNGSLSELLTSESCNSDDQDDCALIDALATAISHVRISEPKRSRLCSPTGPIVQQGSSNMKANNLCKAF 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03473 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Vifa2g03473 469 SUPERFAMILY Protein kinase-like (PK-like) 102 371 IPR011009 -
Vifa2g03473 469 PANTHER SERINE/THREONINE-PROTEIN KINASE 98 373 - -
Vifa2g03473 469 FunFam Serine/threonine-protein kinase PEPKR2 102 424 - -
Vifa2g03473 469 Gene3D Transferase(Phosphotransferase) domain 1 102 386 - -
Vifa2g03473 469 CDD STKc_CAMK 110 358 - -
Vifa2g03473 469 MobiDBLite consensus disorder prediction 1 29 - -
Vifa2g03473 469 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
Vifa2g03473 469 SMART serkin_6 111 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03473 469 ProSiteProfiles Protein kinase domain profile. 111 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g03473 469 Pfam Protein kinase domain 111 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03473 Vifa-Chr2 1004809992 1004813816 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03473 107 359 EF-hand Containing Proteins AT4G35310 46.008 6.91e-80 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa2g03473 Pkinase 7.8e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03473 - - gmx:100812729 779.63