Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03472 ATGAAGAAAATGATGGCTGATCAAGCTATGGTCAGAAAACTTTCTGCATGTGAGACTATGGGATCTGCTACTACTATTTGCACTGATAAAACATGTACACTCACTTTGAATCAGATGAAGGTGACAAAATTTTGGCTTGGTTTAGAACCACTGGAAGATGGTGCATATTTAAATGTTGATCCATTTGTTCTTCAATTGATCAAAGAAGGAGTTGCTCATAATACAACCGGTGGAGTTCATGAAATTAAATCAGTTTCTGATTCAAAATTTGAATTTTCTGGTAGTCCAACAGAAAAGGCAATATTATCTTGGGCTGTTTTGGAATTGAATATGGAGATGGAAACTTTGACAAAAAGTTGCTCTATTCTTCAAGTTGAAACTTTCAACTCAAAGAAGAAAAAAAGTGGAGTTTTGTTGAAAAGAAATGTTGACAACAAAATTAATGCACACTGGAAAGGAGCAGCAGAGATGGTACTGAGAATGTGCTCAAAATACTATGATGCTTATGGCATTGTGAAATATCTTGACAATGAAACCATGTCAAAATTCGAAAGCATTATTCAAGGTATGGCAGCTAGTAGTCTTCGTTGCATCGCTTTCGCATATGCTGAAGTTGATGTTCAAGAGCTAGGAGATGAACGAGAAAACAGCGGGATAGTGGTAAAAGACAATGGTTTAACATTGTTAGGACTTGTTGGTATTAAGGATTCGTGTCGTCCTGGGGTGAAGACTGCGGTGGAAGCTTGCCAACATGCTGGTGTGAATGTCAAAATGATTACAGGTGACAATATTTTCACTGCAAAAGCTATAGCATTTGAATGTGGGATTCTTCAACCTAATCAAGACACAGATGAAACCGTGGTTGAAGGCGAACAATTTTGCAACTTCACGCACGAAGAAAGGTTAGAGAAAGTTGAAAAAATCAGTGTGATGGCAAGATCATCTCCATTTGACAAACTTCTGATGGTTCAATGCTTAAAAGAAAAAGGGCATGTAGTTGCTGTAACAGGAGACAGTACAAATGATGCACCAGCATTGAAAGAAGCTGATATTGGACTTTCAATGGGAATTCAAGGTACAGAAGTTGCAAAAGAGAGTTCAGATATTGTTATATTAGATGACAATTTTGCATCTATAGTAACAGTTTTAAATTGGGGAAGATGTGTTTACAACAACATCCAAAAATTCATTCAATTTCAATTAACAGTGAATGTAGCTGCACTTGTTATCAATTTTGTAGCAGCAGTTTCAGCAGGTGAAGTTCCATTAACAGCAGTTCAATTATTATGGGTCAATTTGATTATGGATACATTAGGTGCTTTGGCTCTTGCAACTGAAAAACCTACTAAGGAATTGATGGATCAAAAACCTGTGGGTAGAACAAAACCTCTTATCACTAACATTATGTGGAGGAATCTTCTGTCACAAGCTATCTACCAAATAGTAATTTTGTTGACTCTACAATTTAAAGGGGAAAATATTTTTGGTGTGACATCAAAGGTAAATGACACATTGATTTTTAATACATTTGTTCTTTGTCAAGTGTTTAATGAGTTCAATGCAAGGAAGTTGGAGAAGAAGAATGTTTTTGAAGGGATATTTAGAAGCAAATTGTTTGTGGGAATAGTTGGTGTGACATTGGTGCTTCAAGTAGTGGTGGTTGAGTTTTTGAAGAAATTTGCTGATATAGAGAGATTGAATTGCAGAGAATGGATTATTTGTATTGGTCTTGCTTCTGCTTCTTGGCCAATTGGTTTTGTTGTGAAGTTGATACCAGTTTCAGATAAACCATTACTTGATTTTCTTAGTGTGAAGAAGAGATTATGA 1827 0.3591 MKKMMADQAMVRKLSACETMGSATTICTDKTCTLTLNQMKVTKFWLGLEPLEDGAYLNVDPFVLQLIKEGVAHNTTGGVHEIKSVSDSKFEFSGSPTEKAILSWAVLELNMEMETLTKSCSILQVETFNSKKKKSGVLLKRNVDNKINAHWKGAAEMVLRMCSKYYDAYGIVKYLDNETMSKFESIIQGMAASSLRCIAFAYAEVDVQELGDERENSGIVVKDNGLTLLGLVGIKDSCRPGVKTAVEACQHAGVNVKMITGDNIFTAKAIAFECGILQPNQDTDETVVEGEQFCNFTHEERLEKVEKISVMARSSPFDKLLMVQCLKEKGHVVAVTGDSTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASIVTVLNWGRCVYNNIQKFIQFQLTVNVAALVINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTKELMDQKPVGRTKPLITNIMWRNLLSQAIYQIVILLTLQFKGENIFGVTSKVNDTLIFNTFVLCQVFNEFNARKLEKKNVFEGIFRSKLFVGIVGVTLVLQVVVVEFLKKFADIERLNCREWIICIGLASASWPIGFVVKLIPVSDKPLLDFLSVKKRL 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03472 608 FunFam Calcium-transporting ATPase 353 595 - -
Vifa2g03472 608 Gene3D - 1 584 - -
Vifa2g03472 608 SUPERFAMILY HAD-like 25 441 IPR036412 -
Vifa2g03472 608 Gene3D - 37 237 IPR023299 GO:0000166
Vifa2g03472 608 FunFam Calcium-transporting ATPase 231 381 - -
Vifa2g03472 608 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 593 IPR023298 -
Vifa2g03472 608 NCBIfam HAD-IC family P-type ATPase 307 417 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa2g03472 608 PRINTS P-type cation-transporting ATPase superfamily signature 27 41 - -
Vifa2g03472 608 PRINTS P-type cation-transporting ATPase superfamily signature 252 262 - -
Vifa2g03472 608 PRINTS P-type cation-transporting ATPase superfamily signature 230 241 - -
Vifa2g03472 608 PRINTS P-type cation-transporting ATPase superfamily signature 336 355 - -
Vifa2g03472 608 PRINTS P-type cation-transporting ATPase superfamily signature 360 372 - -
Vifa2g03472 608 PRINTS H+-transporting ATPase (proton pump) signature 183 201 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa2g03472 608 PRINTS H+-transporting ATPase (proton pump) signature 336 352 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa2g03472 608 PRINTS H+-transporting ATPase (proton pump) signature 368 393 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa2g03472 608 Pfam haloacid dehalogenase-like hydrolase 24 350 - -
Vifa2g03472 608 FunFam Calcium-transporting ATPase 37 237 - -
Vifa2g03472 608 Pfam Cation transporting ATPase, C-terminus 421 591 IPR006068 -
Vifa2g03472 608 NCBIfam calcium-translocating P-type ATPase, PMCA-type 1 593 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vifa2g03472 608 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 34 234 IPR023299 GO:0000166
Vifa2g03472 608 PANTHER CATION TRANSPORTING ATPASE 1 594 - -
Vifa2g03472 608 Gene3D - 24 381 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03472 Vifa-Chr2 1004104991 1004107095 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03472 1 608 Primary Pumps ATPases AT3G63380 68.144 0.0 852
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03472 K01537 - gmx:100793918 969.918