Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03459 ATGAACACTTTCCCTCTCAAATTTCACTTCAATTCCAATTATGCCCTCCCCTACCTCCTCCTCCTTTCCACCACCCTCTTTCCACCGCCAACCACCGCACAGATTCCGAAATTCCTCCCACCACCACCGCCCGGCAACATCTCCGCCCTCAAATTTGACAAGTCCATGGCCATCGTACTAGTCATCCTAGTTGTCGTGTTCTTCATCCTCGGTTTCCTCTCCGTCTATACTCGCCAGTGCGCCGAACAAAGAATGAGAGGAAGATTCGATCTATCAGTTCCGATCGTTGGCAGCAACCGGAGACACCGTGGACTCGACTCCGAAATCATCGAAACGTTTCCTACCTTTGTTTACTCCGCCGTGAAAGGACACAAAATCGGAAGAACCCTGCTAGAATGCGCCGTGTGTTTAAACGAATTCCAAGACGATGAAACGCTGCGTTTGATTCCAAATTGTAGCCACGTGTTTCATCCTGAATGCATCGATGCTTGGCTTGTTAATCACTCCACTTGCCCCGTTTGTCGCGCCAATTTGATTCCGAAACCCGGAGAATCTTCTTTCGTTTCGGTTCAAATTCCGGATCCGGATATATCCGATTCAGATAACCCGACCCGAAATAATAATGATTCTGGAATTAACATTTCATCTCGTTCACCTTCTCCTAAGGTGAATTATTCAGTTACACCGAATGGGGCGCTACCGGTTCGGTCTAATTCAACCGGTTTTAAAATTGGAAATTGGTTTCCGCGGTCACAATCCACGGGTCATTCTCTGGTTCTGGAAGGTGAGAATTACGAGCGGTTCACTTTGAGGTTACCGGAGGAGGTGACGAACCGGTTGGTTGGTTCGACACCGAGCCACGTGGCGAGTTGTGGTGTTACTTTTACTAGAGAGGGAAGTGGGAGGAGGGGTTTTAGAACGAGGAGTGTAGGGAGTAGTGCTCCTGGAAGTAACTATGAGTGGTTTAACCGGGCGGACCGGAGGGGATTCTCTTGGACTCCGCCGTTTATGGGTCGAACCGGTTCGAGTTGGTTGAAGAATAAGTCACCTGGGAAATTGGATGATGTGGGAGAACGGTCTTCTGATCGTTTGTTTGCCGGTAATCTGGGTTAG 1113 0.4906 MNTFPLKFHFNSNYALPYLLLLSTTLFPPPTTAQIPKFLPPPPPGNISALKFDKSMAIVLVILVVVFFILGFLSVYTRQCAEQRMRGRFDLSVPIVGSNRRHRGLDSEIIETFPTFVYSAVKGHKIGRTLLECAVCLNEFQDDETLRLIPNCSHVFHPECIDAWLVNHSTCPVCRANLIPKPGESSFVSVQIPDPDISDSDNPTRNNNDSGINISSRSPSPKVNYSVTPNGALPVRSNSTGFKIGNWFPRSQSTGHSLVLEGENYERFTLRLPEEVTNRLVGSTPSHVASCGVTFTREGSGRRGFRTRSVGSSAPGSNYEWFNRADRRGFSWTPPFMGRTGSSWLKNKSPGKLDDVGERSSDRLFAGNLG 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03459 370 CDD RING-H2_EL5-like 132 175 - -
Vifa2g03459 370 MobiDBLite consensus disorder prediction 192 224 - -
Vifa2g03459 370 SUPERFAMILY RING/U-box 132 182 - -
Vifa2g03459 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 180 IPR013083 -
Vifa2g03459 370 FunFam E3 ubiquitin-protein ligase ATL6 95 181 - -
Vifa2g03459 370 Pfam Ring finger domain 132 175 IPR001841 -
Vifa2g03459 370 PANTHER RING FINGER DOMAIN-CONTAINING 41 184 - -
Vifa2g03459 370 SMART ring_2 133 174 IPR001841 -
Vifa2g03459 370 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Vifa2g03459 370 MobiDBLite consensus disorder prediction 341 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03459 Vifa-Chr2 999861085 999862197 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03459 51 340 Rapid Response to Elicitors AT3G05200 39.000 6.52e-58 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03459 K10664 - gmx:100807828 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03459 2 999861085 999862197 Vifa2g03459 2 999861085 999862197 ECH