Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03455 ATGGCACTTGAAACCGTTGTTTTTCCTCAAGATCCATTCAATTATAGTTACAAGGATAATTACTTCAACTTATTAACTAATGACTATGTTAATAGTAGTAGTAGTACTAATTTACAAGCTCAAGAACAAGAGAATCTTCTCCTAGGAATCATCAACAACAACAACAACGTTGTAGAACAACAACAAAATCTCCATGCAAATTGGGATTCTTGCTCTATTAAGGATCAATGGGAATATTCACACTCTTCTTCTCCTGAAATCTGCACCGTTGATCAAACTATCATCACAGCTCCTCCTTCTACAACAATGGAAGCAGCTACAGAAACTGCCACGTGTCGCAGAAAACGACGTCGCATTAAAAGTGCAAAGAACAAAGAGGAAATTGAAAACCAAAGGATGACTCATATCACTGTTGAGAGAAATCGAAGAAAACAAATGAATGAGTACTTGAACGTGCTAAGATCTTTGATGCCTTCCTCTTATGTTCAAAGGGGTGACCAAGCTTCAATTATTGGGGGAGCAATAAACTTTGTAAAAGAGTTAGAACAACTTTTACAGTCGATGGGGGGCCAGAAGAAAACGAAGGAAAACATATCCTTAAATGGACCACCTTTTTCTGAGTTCTTCACTTTTCCTCAGTACACAACTCACAACACCAATAACAACAACCTCACTATGGAACAAAAACAATGTGCTGTAGCAGACATTGAAGTCACCATGGTAGATACTCATGCCAACATCAAAATACTCTCCAAGAAACAAACAGGACAGCTTATGAAGATTGTTGTTGGGTTGCAAAATCTTAGACTCACCATTCTTCATCTTAATGTTACAACTCTTGATCAAATGGTTCTTTATTCCGTCAGTGTCAAGGTAGAGGAGGGGAGTCAGCTGAATAGTGTGGATGAAATTGCGGCTGCTGTGAATCAACTATTAAGGACAGTTCAACAAGAATTGGCTTATCAATGA 969 0.3808 MALETVVFPQDPFNYSYKDNYFNLLTNDYVNSSSSTNLQAQEQENLLLGIINNNNNVVEQQQNLHANWDSCSIKDQWEYSHSSSPEICTVDQTIITAPPSTTMEAATETATCRRKRRRIKSAKNKEEIENQRMTHITVERNRRKQMNEYLNVLRSLMPSSYVQRGDQASIIGGAINFVKELEQLLQSMGGQKKTKENISLNGPPFSEFFTFPQYTTHNTNNNNLTMEQKQCAVADIEVTMVDTHANIKILSKKQTGQLMKIVVGLQNLRLTILHLNVTTLDQMVLYSVSVKVEEGSQLNSVDEIAAAVNQLLRTVQQELAYQ 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03455 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 193 IPR036638 GO:0046983
Vifa2g03455 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 181 IPR011598 GO:0046983
Vifa2g03455 322 CDD bHLH_AtFAMA_like 133 196 - -
Vifa2g03455 322 PANTHER MAX DIMERIZATION, MAD 74 317 - -
Vifa2g03455 322 SMART finulus 136 187 IPR011598 GO:0046983
Vifa2g03455 322 Gene3D - 118 197 IPR036638 GO:0046983
Vifa2g03455 322 Pfam Helix-loop-helix DNA-binding domain 131 182 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03455 Vifa-Chr2 998773451 998774972 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03455 1 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 46.945 1.59e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa2g03455 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03455 - - gmx:100805420 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03455 2 998773451 998774972 Vifa2g03455 2 998773451 998774972 ECH
Vifa1g00589 1 99802860 99805777 Vifa2g03455 2 998773451 998774972 PCT