Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03451 ATGGCGCTTCTACGTATTCCCTCACCTCAACTATCCACAAAACAACCCCATCGAGCAATAATAACCTCTTTCTCCTCCATAGACTTTAACAAGAACAAAAACTACTCCATCAACCTCAAATCCAATCTCTTGTTTTCTTCCATTCACTCGCTACGTCTATCTACTACTATCACAACCAAACAACACGCTAGTTTCACTCTCAGATTTTCCCAACAACAACAACAAACTCAAGTAACCCAAGAAAATGCAGAAGAATTTTCTAGTACTAGGTTGCTTGCTCAGAATGTTCCGTGGACAAGTACGGTTGAAGATATTCGTACTTTATTTGAAAAACATGGGAGAGTCGTTGATGTTGAGCTTTCTATGTATAATAAGAACAGAAACAGAGGTTTAGCGTTTGTGGAAATGGGTTCACCAGAAGAGGTTCTTGCAGTTTTCAATACTCTCCAATCATATGAGTTTGAAGGCCGAGTAATAAATCTCAAATATGCTCGACCCAGAAAGGAGAAAATACCGCCACCTGTGGAACATAAGCCAATAACATTTAACTTGTTTGTTGCAAACTTGTCGTATGAAACAAAGTCTAAAGATCTCAAAGAATTTTTTGACTCGGGAGCCAGTGGAGTTGTTTCTGCAGAGGTTGTGTACCATGAGAATCCCAGAAGACCATCTGGTTATGGATTTGTGTCCTTCAAGTCCAAGAAAGAAGCAAATGACGCTCTTTCGGAGTTTCAAGGAAAGAATTTGAAGGGAAGGCCAATCAGGGTTGCACCTAGTAGGCGATTTGTTCAACTGGCAGAGGAGAGTGCAGTGTCCAAAGATACATCTTCTGAGTCGAGCGTGAACGAGGCAGTAACGGACAAAGCTGATTGA 873 0.4101 MALLRIPSPQLSTKQPHRAIITSFSSIDFNKNKNYSINLKSNLLFSSIHSLRLSTTITTKQHASFTLRFSQQQQQTQVTQENAEEFSSTRLLAQNVPWTSTVEDIRTLFEKHGRVVDVELSMYNKNRNRGLAFVEMGSPEEVLAVFNTLQSYEFEGRVINLKYARPRKEKIPPPVEHKPITFNLFVANLSYETKSKDLKEFFDSGASGVVSAEVVYHENPRRPSGYGFVSFKSKKEANDALSEFQGKNLKGRPIRVAPSRRFVQLAEESAVSKDTSSESSVNEAVTDKAD 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03451 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
Vifa2g03451 290 PANTHER OS02G0815200 PROTEIN 31 258 - -
Vifa2g03451 290 SUPERFAMILY RNA-binding domain, RBD 69 173 IPR035979 GO:0003676
Vifa2g03451 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 261 IPR000504 GO:0003723
Vifa2g03451 290 Gene3D - 175 265 IPR012677 -
Vifa2g03451 290 MobiDBLite consensus disorder prediction 269 284 - -
Vifa2g03451 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 255 IPR000504 GO:0003723
Vifa2g03451 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 159 IPR000504 GO:0003723
Vifa2g03451 290 SMART rrm1_1 183 257 IPR000504 GO:0003723
Vifa2g03451 290 SMART rrm1_1 90 162 IPR000504 GO:0003723
Vifa2g03451 290 SUPERFAMILY RNA-binding domain, RBD 172 262 IPR035979 GO:0003676
Vifa2g03451 290 Gene3D - 56 172 IPR012677 -
Vifa2g03451 290 MobiDBLite consensus disorder prediction 268 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03451 Vifa-Chr2 997186202 997187848 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03451 88 261 Eukaryotic Initiation Factors Gene Family AT3G16380 31.522 1.74e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03451 - - gmx:100790439 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03451 2 997186202 997187848 Vifa2g03451 2 997186202 997187848 ECH