Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03450 ATGGCGCTTCTACGTATTCCCTCACCTCAACTATCCACAAAACAACCCCATCGAGCAATAATAACCTCTTTCTCCTCCATAGACTTTAACAAGAACAAAAACTACTCCATCAACCTCAAATCCAATCTCTTGTTTTCTTCCATTCACTCGCTACGTCTATCTACTACTATCACAACCAAACAACACGCTAGTTTCACTCTCAGATTTTCCCAACAACAACAACAAACTCAAGTAACCCAAGAAAATGCAGAAGAATTTTCTAGTACTAGGTTGCTTGCTCAGAATGTTCCGTGGACAAGTACGGTTGAAGATATTCGTACTTTATTTGAAAAACATGGGAGAGTCGTTGATGTTGAGCTTTCTATGTATAATAAGAACAGAAACAGAGGTTTAGCGTTTGTGGAAATGGGTTCACCAGAAGAGGTTCTTGCAGTTTTCAATACTCTCCAATCATATGAGTTTGAAGGCCGAGTAATAAATCTCAAATATGCTCGACCCAGAAAGGAGAAAATACCGCCACCTGTGGAACATAAGCCAATAACATTTAACTTGTTTGTTGCAAACTTGTCGTATGAAACAAAGTCTAAAGATCTCAAAGAATTTTTTGACTCGGGAGCCAGTGGAGTTGTTTCTGCAGAGGTTGTGTACCATGAGAATCCCAGAAGACCATCTGGTTATGGATTTGTGTCCTTCAAGTCCAAGAAAGAAGCAAATGACGCTCTTTCGGAGTTTCAAGGAAAGAATTTGAAGGGAAGGCCAATCAGGGTTGCACCTAGTAGGCGATTTGTTCAACTGGCAGAGGAGAGTGCAGTGTCCAAAGATACATCTTCTGAGTCGAGCGTGAACGAGGCAGTAGTTTTCATTTTTGTGAACTTGAGGCTGAAAAGATAA 891 0.4052 MALLRIPSPQLSTKQPHRAIITSFSSIDFNKNKNYSINLKSNLLFSSIHSLRLSTTITTKQHASFTLRFSQQQQQTQVTQENAEEFSSTRLLAQNVPWTSTVEDIRTLFEKHGRVVDVELSMYNKNRNRGLAFVEMGSPEEVLAVFNTLQSYEFEGRVINLKYARPRKEKIPPPVEHKPITFNLFVANLSYETKSKDLKEFFDSGASGVVSAEVVYHENPRRPSGYGFVSFKSKKEANDALSEFQGKNLKGRPIRVAPSRRFVQLAEESAVSKDTSSESSVNEAVVFIFVNLRLKR 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03450 296 Gene3D - 56 172 IPR012677 -
Vifa2g03450 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
Vifa2g03450 296 PANTHER OS02G0815200 PROTEIN 31 258 - -
Vifa2g03450 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 255 IPR000504 GO:0003723
Vifa2g03450 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 159 IPR000504 GO:0003723
Vifa2g03450 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 261 IPR000504 GO:0003723
Vifa2g03450 296 SMART rrm1_1 183 257 IPR000504 GO:0003723
Vifa2g03450 296 SMART rrm1_1 90 162 IPR000504 GO:0003723
Vifa2g03450 296 SUPERFAMILY RNA-binding domain, RBD 88 258 IPR035979 GO:0003676
Vifa2g03450 296 Gene3D - 175 265 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03450 Vifa-Chr2 997186046 997187848 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03450 88 261 Eukaryotic Initiation Factors Gene Family AT3G16380 31.522 2.70e-13 68.2